Salvelinus namaycush (lake trout): 120064980
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Entry
120064980 CDS
T07522
Name
(RefSeq) RNA-binding protein 39-like isoform X1
KO
K13091
RNA-binding protein 23/39
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
snh03041
]
120064980
Spliceosome [BR:
snh03041
]
Common components
Common spliceosomal components
General mRNP proteins
120064980
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GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_occluded
PRP38_assoc
RRM_7
RBD_DEAH11
CDC45
Motif
Other DBs
NCBI-GeneID:
120064980
NCBI-ProteinID:
XP_038871526
UniProt:
A0A8U1F7X3
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Position
Sna20:complement(4306292..4330426)
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AA seq
541 aa
AA seq
DB search
MADDFDIEAMLEAPYRKDEIKHSSPNGHKERSKKKKKSRSRSRDRKRSKSRDRKKSHDHK
RSRSHERKRSRSRERRRSRSRSRERSGRYRDHKTTFSGPKFNGGSRGKIGPPPVIKLSRR
RSRSQSPFKKEKSPVRQVFLGEMTQKSSIRQPIDNLTPEERDARTVFCMQLAARIRPRDL
EEFFSAVGKVRDVRMISDRNSRRSKGIAYIEFVEANSVPLAIGLSGQRLLGVPIIVQASQ
VMAEKNRAAAMANNLQKGNAGPMRLYVGSLHFNITEEMLRGIFEPFGKIESIQLMMDSET
GRSKGYGFITFSDTECAKKALDQLNGFELAGRPMKVGNVTERTDASTASSFLDSDELERT
GIDLGTTGRLQLMARLAEGTGLQIPPAAQQALQMSGAIAIGAMAAVSAAMNPAMNMNMNM
NTAMKLPSQPLATHCFQLSNMFNPQSEDNPGWDVDIQHDVIEECNKHGGVVHIYLDKNST
EGNVYVKCPSLPAAMAAVNALHGRYFAGKMITAAYVPLPTYHNLFPDSVKAIQLLIPPAL
R
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
atggctgatgactttgacatagaagcaatgcttgaggctccatatcgaaaggatgagatc
aagcacagtagtccaaatggacacaaggaacgcagcaagaagaaaaaaaagagcaggagc
cgaagcagagacaggaagagaagcaaaagccgggatcgcaagaagagccatgaccacaag
cggagccgcagccacgagcgaaagcggagccgcagcagggagaggcgccggagccgctct
cggagcagagagcgcagcggccgctacagggaccacaagaccaccttctctgggccgaaa
tttaacggtggttccagagggaagattggccccccacctgtcatcaagctaagccgaaga
cgttccagaagccaaagccctttcaagaaagagaagagtcctgtgaggcaagtgttcctt
ggggagatgacgcaaaagagttcaatcaggcagccaatagacaacctgactccagaggaa
agggacgctcgcacagtgttctgcatgcagcttgcagctagaatccgaccacgagacctg
gaggagttcttctctgcagtgggaaaggtgagagatgtgcgcatgatctctgacagaaat
tcgaggaggtcgaaggggattgcttacatcgagtttgtggaggccaactcggtgcctctg
gctataggattgtctggccagcgacttctgggggtgccaataattgttcaggcctcacag
gtaatggctgagaaaaacagggctgctgccatggccaacaacctgcagaagggcaacgct
ggcccgatgagactctacgtcggatccttacactttaacatcacagaggagatgctacga
ggaatatttgagccttttggaaagattgagagtattcagctcatgatggatagtgagacg
gggagatccaaaggatatggcttcatcactttctcagacacagagtgtgccaagaaggct
ttggatcagttgaacggctttgagctggctggccggccgatgaaggtgggcaatgtgact
gagcgcacagacgcctccaccgccagctccttcctggacagcgacgagctggagaggaca
ggcatcgacctgggcaccactgggcgcctgcagctcatggccagactggctgaaggcacg
ggactgcagattcccccagcagcacagcaagccctgcagatgagtggggccattgctatt
ggtgccatggccgctgtatcagctgccatgaatcctgctatgaacatgaatatgaacatg
aatacagctatgaaactaccctcacagccacttgctacacactgtttccagctgtctaac
atgttcaaccctcagtctgaagataacccaggctgggatgttgacattcagcatgatgtc
attgaggaatgcaacaaacatggaggagttgtgcacatataccttgacaagaattccact
gaaggcaacgtgtatgtgaaatgtccatcccttcctgctgccatggctgcagtaaacgca
ttacatggtcgatattttgcaggtaaaatgatcacagcggcatacgtccctctcccaaca
tatcacaaccttttccctgactctgtgaaggctatccagctcctgatccctcctgctctc
cgatga
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