Salvelinus namaycush (lake trout): 120065038
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Entry
120065038 CDS
T07522
Name
(RefSeq) eukaryotic initiation factor 4A-III
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03013
Nucleocytoplasmic transport
snh03015
mRNA surveillance pathway
snh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120065038
09122 Translation
03013 Nucleocytoplasmic transport
120065038
03015 mRNA surveillance pathway
120065038
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snh03019
]
120065038
03041 Spliceosome [BR:
snh03041
]
120065038
03009 Ribosome biogenesis [BR:
snh03009
]
120065038
03012 Translation factors [BR:
snh03012
]
120065038
Enzymes [BR:
snh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120065038
Messenger RNA biogenesis [BR:
snh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
120065038
mRNA cycle factors
Stress granule specific factors
120065038
Spliceosome [BR:
snh03041
]
Complex C
Other components
EJC/TREX
120065038
Ribosome biogenesis [BR:
snh03009
]
Eukaryotic type
90S particles
Helicases
120065038
Translation factors [BR:
snh03012
]
Eukaryotic type
Initiation factors
eIF-4
120065038
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Cas3-like_C_2
AAA_30
Flavi_DEAD
TniB
Motif
Other DBs
NCBI-GeneID:
120065038
NCBI-ProteinID:
XP_038871622
UniProt:
A0A8U0Q416
LinkDB
All DBs
Position
Sna2:58480463..58488378
Genome browser
AA seq
406 aa
AA seq
DB search
MEVATVPRTRRLLKEEDMTKIEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQ
QRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAPTRELAGQIQKV
LLALGDYMNVQCHSCIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLV
LDEADEMLNKGFKEQIYDVYRYLPPATQVCLISATLPHEILEMTNKFMTDPIRILVKRDE
LTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVS
SMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI
GRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atggaagtagccaccgtaccgcgcacgaggcgtctattgaaggaggaagacatgaccaag
atcgagtttgagaccagcgaggaggtcgatgttacgcctaccttcgacacaatgggccta
cgagaggatctcctccgtgggatctacgcatacggtttcgagaagccttccgcaatccaa
caaagagcaattaaacagatcatcaagggtagagatgtcattgcacagtctcagtcagga
acaggaaagactgccacgttttgcgtatcagtgctgcagtgtcttgacattcaggtgcgt
gaaacccaagcactgatcctggctcccaccagagagttggctggacagatacagaaggtg
ctcctggccctcggtgactacatgaacgtccagtgtcattcctgcatcggagggacaaac
gtgggtgaggacatccgtaaactggactatggccagcacgtagtagcagggacccctggg
agagtgtttgatatgatccgcaggaggagtttgaggacgcgtgccatcaagatgctggtg
ctggacgaagcagacgaaatgctcaacaagggtttcaaagagcagatctacgacgtgtac
cggtacctgccccccgccacccaggtgtgtctgatcagcgccacgctgccccacgagatc
ctggagatgaccaacaagttcatgaccgaccccatccgcatcctggtcaaacgtgatgag
ttgactctggagggcatcaagcagttcttcgtggcagtagagagggaggagtggaagttt
gacaccctgtgtgacctgtatgacaccctcaccatcacgcaggctgtcatcttctgcaac
accaagcggaaggttgactggctgactgagaagatgagggaggccaacttcactgtttcc
tccatgcatggagacatgccccagaaggagagagagtccatcatgaaagagttccggtcc
ggcgccagccgagtgcttatctcaactgatgtgtgggcccgaggtctggatgtgccccag
gtgtccctcatcatcaactacgacctgcccaacaacagagagctgtacatccacaggatt
ggccgatcgggtcgttacggccgcaagggtgtggccatcaactttgtgaagaacgacgac
atccgtattctccgtgacattgagcagtactattccacacagatcgatgaaatgccaatg
aacgtggctgacctgatctaa
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