Salvelinus namaycush (lake trout): 120065063
Help
Entry
120065063 CDS
T07522
Name
(RefSeq) host cell factor 1-like
KO
K14966
host cell factor 1
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03083
Polycomb repressive complex
snh04980
Cobalamin transport and metabolism
snh05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
120065063
09150 Organismal Systems
09154 Digestive system
04980 Cobalamin transport and metabolism
120065063
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
120065063
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
snh01009
]
120065063
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
snh03036
]
120065063
03029 Mitochondrial biogenesis [BR:
snh03029
]
120065063
Protein phosphatases and associated proteins [BR:
snh01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
120065063
Chromosome and associated proteins [BR:
snh03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
NSL complex
120065063
HMT complexes
COMPASS/SET1 complex
120065063
MLL-HCF complex
120065063
Polycomb repressive complex (PRC) and associated proteins
PR-DUB complex
120065063
Mitochondrial biogenesis [BR:
snh03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
120065063
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Kelch_3
Kelch_5
Kelch_4
Kelch_1
Kelch_6
fn3
Motif
Other DBs
NCBI-GeneID:
120065063
NCBI-ProteinID:
XP_038871673
UniProt:
A0A8U1F860
LinkDB
All DBs
Position
Sna20:14981804..14995298
Genome browser
AA seq
1615 aa
AA seq
DB search
MTGSMVSGTTGSTLQPRWKRVLGWSGPVPRPRHGHRAVAIKELMVVFGGGNEGIVDELHV
YNTATNQWFIPAVRGDIPPGCAAYGFVCDGTRLLVFGGMVEYGKYSNDLYELQASRWEWK
KLKAKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNIPRYLNDLYTLELRAG
SSVVGWDIPITYGVLPPPRESHTAVVYTEKDSKKSRLIIYGGMSGCRLGDLWTLDIDTLT
WTKPSVNGTAPLPRSLHSATTITNKMFVFGGWVPLVMDDVKVATHEKEWKCTNTLACLNL
DSMAWESVVMDTLEDNIPRARAGHCSVAINSRLYVWSGRDGYRKAWNNQVCCKDLWYLET
ERPHAPSRVQLVRANTNSLEVSWGAVSTADTYLLQLQKYDIPAATAVTSQALNAATSLQG
NLPKSPATAAPSAQNLPHTAILKVAAPPSGTGTSLVTVRPNQAGKSPVTVTSLLPGVRMV
VPAQTAQGTPVGSSPQMSGMAALAAAAAATQKIPPSSSTVLNIPAGATLVKTMAVSPGST
TVKMASPLMVSNPATRMLKTAAAQLGIATVSSPNSPNRPIITVHKSGTVTVAQQHQVVTT
MVGGVTKTITLVKSPLTMGGSGTLQISNLGKMMSVVQTKPVQTSAVTGQASTNPLTQLIQ
TKGSLPAGTILKLVTSADGKPTTIITTSQAGGTGNKPTILNISGMSPTTTKQGTTIIKTI
PMSAIMTQPGATVTSSTGKTPYTIITTKMMTTGTPGKIITTMPKLGTATGQQGLTQVVLK
GAPGQPGTILRTVPMGGVRLVTPVTMSSVKPNITTLVVKGTTGVTTLGTVTGTVSSSLAG
SIVASANASLATPITTLGTIATLSSQVINPTAITVSAAQTSLTTATTLSTSTMSANQPTQ
VTLITTPSGVEAQPVQDLPVSFLASPTSEQPSSTEVGDAPGTVTMVCSNPPCETHETGTT
NTATTASSDIGGVQRVCSNPPCETHETGTTNTATTASTDMGGAMRTSNSSSSGTATGNQG
PENLSTGTTFTPTTACSNMGSAQTGTVQSPKPAVGSTVCLNPPCETHETGTTNTPSQASS
NMAGNQTGTVQRVCSNPPCETHETGTTNTATTATADGADSATSSTETPSTTASETTPATI
QSRAITTVTQSTPAPGPSVPSILSITEGAAGSTEEPMQTDAATEGGETAMETGLSPELAE
GQMGTGLSAEELAVTAAVEAAAQAAATEEAQALAIQAVLQAAQQAVMNEGDSGSTGQQAI
TIPIVLTQQELAALVQQQHQLQEAQAQAQAQAQAQQQGNAQALPTEGLAPADSLNDPASE
SNGHPKMAAAVSSAVASLLPRTSTETLAPSSTLAVASPAKLQAAVAEVANGIEGGKLNPQ
PAPIKTLVKKENQWFDVGIVKVTNMVVTHFFIPEDDSQVEDDSGAIPDYNQMKKMELQPG
TAYKFRVAGINACGRGSFSEISAFKTCLPGFPGAPCAIKISKSPDGAHLTWEPPSVTSGK
IIEYSVYLAIQSTQTAEPKASTPAQLAFMRVYCGPNPSCLVQSSSLSNAHIDYTTKPAII
FRIAARNEKGYGPATQVRWLQESSKDGASAKPAPKRPVSSPDAKVAGQKKARTDQ
NT seq
4848 nt
NT seq
+upstream
nt +downstream
nt
atgactggttccatggtgtctgggaccactggttcaactttacagccacgatggaagcgg
gtactgggatggtctggccctgtccctcggcccagacatggtcacagagccgttgctata
aaggaattgatggttgtttttggaggaggaaatgaaggaattgtggatgagttgcatgtc
tacaacacagcaacaaaccaatggtttatccctgcggttcgtggtgatattccccctgga
tgtgctgcatatggttttgtttgtgatggcacccggcttctggtgtttggtggaatggtg
gaatatggaaaatacagcaatgatctctatgagctacaggccagtagatgggaatggaaa
aagttgaaagctaagactcccaaaaacggcccacctccatgtcctcgacttggtcacagt
ttctcgctggtgggtaacaagtgctacttgtttggaggactggctaatgacagcgaggac
cccaaaaacaacatccccagatacctaaatgatctgtacaccctggagcttcgtgctggc
tccagtgttgtgggctgggatataccaattacttatggtgttttgccgcctcctcgcgag
agccacactgccgtagtgtacacagaaaaggacagcaagaaatctcgcctgatcatctat
ggagggatgagtggctgtcgtctgggagatctatggacccttgacatcgacaccctgacc
tggactaagccatcagtgaatggcacagcacctctgcccaggagtcttcactctgccacc
accatcacaaacaagatgtttgtgtttgggggatgggttcccctggttatggatgatgtg
aaggtggccacacatgagaaggaatggaagtgcacaaacacactggcctgcctaaatctc
gactccatggcctgggaatcagtggtgatggatactctggaggacaatatcccaagggcc
cgggcaggacattgctctgtggccatcaactctagattgtatgtctggagtggccgtgac
ggttaccgtaaagcatggaacaaccaagtctgctgtaaagacctctggtaccttgaaaca
gagaggccacacgctccctcgagagtgcagctagtccgtgccaacaccaactccctggag
gtaagctggggcgctgtgtccaccgcagacacctatctgctgcagctacaaaagtacgac
attccagctgccactgctgtgacctcgcaggccctcaatgccgccacctctctgcaaggg
aacttgcctaagagcccagccacagctgctccctctgctcagaacctaccacacacagct
atcttgaaggttgcagcgcctccgtctggcacgggtacctcccttgtcactgtgcgaccc
aaccaggctgggaaatcccctgtcactgtgacatcacttcttccaggagttcgcatggtt
gttcctgctcagaccgcccaaggaacaccagttggcagcagccctcagatgagtggcatg
gcagctttggctgcagctgcagcagccacacaaaagatcccaccctcttcaagcactgta
ctcaacattccagcaggtgccacccttgtcaaaaccatggctgtctcccctggctccacc
acagtcaaaatggcatctcctctcatggttagtaacccagccactcgcatgctgaagaca
gctgcagctcagttgggcatagcgaccgtatcgtcacccaactcgcccaacagacccatc
atcactgtgcacaagtcgggcacggttaccgtagcccagcaacaccaggtggttaccacc
atggtgggaggagtcaccaagaccatcaccctggtcaagagccccctcacaatgggaggc
agcggcactttgcagatctccaaccttggcaagatgatgtctgtggtacaaaccaagcca
gtgcagacatcggctgttacaggccaggcttccactaaccctctcacacagctcatacag
accaagggttctctccctgccggcaccatactgaagctggtgacctcagcggacggcaag
cccaccaccatcatcaccacatcccaggcgggaggaacagggaacaaaccgaccatcctg
aacatcagcggcatgtcgcccaccacaaccaaacagggcaccaccatcatcaagaccatc
cctatgtctgctattatgacccagcctggagcaacagtgaccagcagcacagggaagacg
ccctataccatcatcaccaccaagatgatgaccactggcactccaggcaaaatcatcact
accatgcccaagcttggcactgcaactggccagcaagggctgacacaggtggttttgaag
ggagctccgggccaacctggcaccattctgcgcactgtacccatgggtggagtccgactc
gtcaccccggtcacgatgtcttctgtcaagcccaatataactacactggtcgtcaaggga
acaactggtgtcaccaccctggggactgtcacagggacagtctcctccagtctggcaggg
agcattgtagccagtgccaatgcttctctggcaactccaatcaccaccctgggaaccatc
gccaccctgtccagtcaagttatcaaccccactgccatcactgtgtcagcagcccagacc
agtctgaccacagctactaccctttccacttccaccatgtcggcaaaccagccaacccag
gtgactctcatcaccacccccagcggggttgaggcccagccagtgcaggacctgcctgtg
tccttcctggcctcccccacctctgagcagccctcttccactgaggttggggatgcccct
ggcactgtcaccatggtctgctccaaccccccctgtgagacccacgaaacaggaaccacc
aacaccgcaaccacagcctcctccgatataggtggggtgcagagggtctgctccaacccc
ccttgtgagacccacgagacgggcaccaccaacactgcaacgactgcctccactgacatg
ggcggggcaatgaggacgtccaactcttcttcctccggaaccgccacaggcaaccaggga
ccagagaacctgagcaccggcaccacattcacccccaccacggcatgctccaacatgggc
tcagcccagaccggaactgtgcagagtcccaagccagccgtgggctctacggtgtgctta
aacccaccctgcgagacccacgaaactgggaccaccaacaccccgtcccaggccagctca
aacatggccgggaaccagacagggacggtgcagagggtgtgttccaaccccccctgtgaa
acccacgagactggcaccaccaacacggcaacaactgccacagcagatggagcagacagt
gccaccagcagtacagagactccttccaccactgcatcagaaacaaccccagccaccatc
cagagcagagccatcactactgtgacccagtccacaccagccccggggccctcagtacct
tccattttgtcgatcactgagggtgcagcaggttccacagaagagcccatgcagacagac
gcggccacggaggggggagagacagctatggagactgggctgtccccagagctggcagag
ggacagatggggacaggtttgtctgcagaggagctagctgtgaccgcagcggtggaggca
gcggcgcaggctgcagccacagaggaggcccaggccctggccattcaggcagtcctccag
gcagcacagcaggcagtcatgaacgagggtgattctggctcgaccggacagcaggccatc
acaatccccatcgtcctgacccagcaggagttggcagccttggtccagcagcagcaccaa
ctccaggaagcccaggctcaggcccaggcccaggctcaggcccagcagcaaggaaacgcc
caggccctacccactgagggccttgcccccgcagacagcctcaacgaccctgcgtctgag
agcaacgggcaccccaagatggctgcagctgtctccagcgctgtggcatcactgctgccg
cgcacatccactgagaccctggccccctcaagcacattggctgttgccagtccagccaag
ctgcaagctgctgtagcagaggtggccaatggcattgagggtgggaagctaaaccctcaa
ccagcccctatcaagactcttgtcaaaaaagagaaccagtggtttgacgttggcatcgtc
aaggtgacaaacatggtggttacgcacttcttcatcccagaggacgattctcaagtagag
gatgactcgggcgccatcccagactataaccagatgaagaaaatggagctgcagcctggc
acagcttacaagttccgtgtcgctggcatcaacgcttgtggtcgtggttccttctcagag
atatctgcttttaagacttgtttaccaggcttccctggagcaccttgtgccatcaaaatc
agcaagagcccagatggtgcccacctcacctgggagcctccctcggtgacatcagggaag
atcattgagtactctgtgtacctggccatccagagcacccagacagctgagcccaaggcc
tccaccccagcccagctggccttcatgcgggtgtactgtgggcccaacccctcctgcttg
gtgcagtcctccagcctctccaatgcccacatagactacaccaccaagcccgccatcatt
ttccgcatagctgcgcgcaacgagaagggctacggccctgccacacaagtccgatggctg
caagagtccagcaaagatggagcctcggcaaaacctgccccaaaaagaccagtttcctcg
cctgatgctaaggttgctggtcaaaagaaagcaagaacggaccagtga
DBGET
integrated database retrieval system