Salvelinus namaycush (lake trout): 120065333
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Entry
120065333 CDS
T07522
Name
(RefSeq) retinoblastoma-binding protein 5-like isoform X1
KO
K14961
COMPASS component SWD1
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
snh03036
]
120065333
Chromosome and associated proteins [BR:
snh03036
]
Eukaryotic type
Histone modification proteins
HMT complexes
COMPASS/SET1 complex
120065333
COMPASS/SET1 complex (yeast)
120065333
MLL-HCF complex
120065333
MLL3/MLL4 complex
120065333
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_WDHD1_1st
WD40_Prp19
Beta-prop_EML_2
WD40
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
WDR55
Beta-prop_IFT140_1st
EIF3I
Beta-prop_EML
Beta-prop_TEP1_2nd
Beta-prop_WDR19_1st
Beta-prop_HPS5
WD40_MABP1-WDR62_2nd
Beta-prop_RIG_2nd
Beta-prop_IFT122_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_SPT8
Beta-prop_WDR11_1st
Beta-prop_LRRK2
WDR54
Beta-prop_SCAP
Beta-prop_TEP1_C
WD_LRWD1
Beta-prop_NUP159_NUP214
Beta-prop_WDR75_1st
Beta-prop_Vps41
Frtz
Motif
Other DBs
NCBI-GeneID:
120065333
NCBI-ProteinID:
XP_038872172
UniProt:
A0A8U1F910
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Position
Sna20:complement(39916850..39934403)
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AA seq
554 aa
AA seq
DB search
MNLELLESFGQNYPEEADGTLDCISMALTCTFNRWGTLLAVGCNDGRIVIWDFLTRGIAK
IISAHIHPVCSLCWSRDGHKLVSASTDNIVSLWDVLTGDCDQRFRFPSPILKLQYHPRDL
DKVLVCPMKSAPVLLTLSDSKHVVLPVDDDSDLNVVAAFDRRGEYIYTGNAKGKILVLNT
NTQDLVASFRVTTGTSNTTAIKSIEFARKGSCFLINTADRIIRVYDGREILTCGRDGEPE
PMQKLQDLVNRTPWKRCCFSGDGEYIVAGSARQHALYIWEKSIGNLVKILHGTRGELLLD
VAWHPVRPIIASISSGVVSIWAQNQVENWSAFAPDFKELDENVEYEERESEFDIEDEDKS
EPEQTGADAAEDEEVDVTSVDPIVAFCSSDEELEDFKALLYLPIAPEVEDPEENPFGPPP
DAAVQTAPAEDGSSHTGGGDKKQRQPSSEGAPPKKKARTTTIIELQGVPSDEVHPLLGVK
GDSKSKKKTAGRPKGSKGKEKDFPFRPKPYRGDRVYPDGVEVGGGMKGRVEGGLTAAGSL
VSQSYKRHDIVGLD
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atgaatttagagttgctcgagtcgttcgggcagaactatccagaggaggcagatggcact
ctggactgtatcagtatggctctcacgtgcacttttaaccgctggggcacgcttctggcg
gtggggtgcaacgacggacgcatcgtcatttgggacttcctgacaaggggcatcgctaag
attatcagtgctcacatccatccagtctgctcactatgttggagtcgagatgggcacaag
ctggtgagtgcgtcgacagataacatagtgtccctgtgggacgtcctgactggagactgt
gaccaaaggttccgcttcccctcgcccatcctaaaattgcagtaccaccccagagacttg
gacaaggtcctggtgtgtcctatgaagtctgccccggtactgctgacgctgtcagactct
aaacatgtggttctgcccgtggatgacgactctgacctgaacgtagtggcggccttcgac
cggcgaggggagtacatctacaccggcaacgccaagggaaagattttggtgctgaacact
aacacacaggatctggtggcatcgtttcgggttacgacagggaccagcaacactacagcc
atcaagtccatagagtttgcacgaaagggcagttgtttcctcatcaacacagcagacaga
atcatcagggtgtatgacgggagggagattctcacctgtgggagagatggggagccagag
cccatgcagaaactacaggacctggtcaacagaacaccgtggaagcgatgttgtttctct
ggggatggggagtacatcgtggctggttcagcccggcagcatgctctgtacatctgggag
aaaagcatcggtaacctggtgaagatcctccatggaaccagaggagaactactgctggat
gtggcttggcaccctgtgcggccaatcatcgcctccatttccagcggagtggtgtccatc
tgggctcagaaccaagtggaaaactggagtgcgttcgccccagactttaaggagctggat
gagaacgtggagtacgaggagagagagtctgagtttgatatagaagacgaggataaaagt
gaacctgaacagacaggtgcggatgctgcggaggatgaggaggtggatgtgacctctgtt
gaccccattgtggctttttgcagcagtgatgaggagctagaagacttcaaggccttgctc
tacctgcccatcgctccagaggtagaggaccctgaggagaatccatttggtccccctccg
gatgcagccgtccagaccgcccccgcagaagatggttcttcccacacagggggcggggac
aagaagcaacgccagccatcctcagaaggagctcctcccaaaaagaaggcccgtaccacc
accatcatcgaactacaaggggtgcccagtgatgaggtgcaccccttactgggggtgaag
ggagacagcaagtccaagaagaagacggcagggcggccgaaaggctccaaaggtaaagag
aaagacttccccttcaggcccaaaccctacaggggggacagggtctaccctgacggagtg
gaagtgggaggagggatgaagggcagagtggaggggggccttactgctgcagggagcctg
gtttcacagtcctacaaacggcatgatattgtgggtctggactga
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