Salvelinus namaycush (lake trout): 120065363
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Entry
120065363 CDS
T07522
Name
(RefSeq) voltage-dependent L-type calcium channel subunit alpha-1D-like
KO
K04851
voltage-dependent calcium channel L type alpha-1D
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04010
MAPK signaling pathway
snh04020
Calcium signaling pathway
snh04218
Cellular senescence
snh04260
Cardiac muscle contraction
snh04261
Adrenergic signaling in cardiomyocytes
snh04270
Vascular smooth muscle contraction
snh04530
Tight junction
snh04912
GnRH signaling pathway
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
120065363
04020 Calcium signaling pathway
120065363
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
120065363
09144 Cellular community - eukaryotes
04530 Tight junction
120065363
09150 Organismal Systems
09152 Endocrine system
04912 GnRH signaling pathway
120065363
09153 Circulatory system
04260 Cardiac muscle contraction
120065363
04261 Adrenergic signaling in cardiomyocytes
120065363
04270 Vascular smooth muscle contraction
120065363
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
snh04040
]
120065363
Ion channels [BR:
snh04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
120065363
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Ca_chan_IQ
GPHH
CAC1F_C
PKD_channel
DUF2975
Motif
Other DBs
NCBI-GeneID:
120065363
NCBI-ProteinID:
XP_038872224
UniProt:
A0A8U1FA63
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All DBs
Position
Sna20:complement(40973706..41112068)
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AA seq
2096 aa
AA seq
DB search
MSANGPAPVALASAPATTPVAPPVAAPVAAPTAAPVPVPTVPVGALAQKKRAQYAKSKKQ
GSNANTRPARALFCLKLNNPIRRACISLVEWKPFDIFILIAIFANCMALAVYIPFPQDDS
NSTNHDLETVEHVFLVIFTIETFLKIIAYGLVAHQNAYVRNGWNMLDFVIVVVGLFSVVL
ELLTKDSVETKEEAEAGAAAAAAAAALHPSAHGHGGKSGGFDVKALRAFRVLRPLRLVSG
VPSLQVVLNSIIKAMVPLLHIALLVLFVIIIYAIIGLELFIGKMHATCFFPSTGMIAEDD
PAPCAISGHGRQCPINGTECREGWHGPNNGITNFDNFLFAMLTVFQCITMEGWTDVLYWM
NDAMGLELPWVYFVSLVIFGSFFVLNLVLGVLSGEFSKEREKAKARGDFQKLREKQQLEE
DLKGYLDWITQAEDIDPENEDEEGNEEGKRNRVTLADLTEKKKGSRFGWFSQSSDTHASM
PASETESVNTENVTEDEVKTPCCGPFCQKISKSKFSRRWRRWNRFCRRKCRLAVKSVPFY
WLVIILVFLNTLTISSEHYMQPDWLTQVQDVANKVLLGCFTCEMMTKMYSLGLQAYFVSL
FNRFDCFVVCGGITETILVELAIMSPLGISVFRCVRLLRIFKVTRHWQSLSNLVASLLNS
MKSIASLLLLLFLFIIIFSLLGMQVFGGKFNFDETQTKRSTFDNFPQALLTVFQILTGED
WNAVMYDGIMAYGGPSSSGMIVSFYFIILFICGNYILLNVFLAIAVDNLGDAESLNAPRD
KKEEKKEDLVPVEEEEENAAAEEEEEPEVPAGPRPPISELVKKEKITPIPDGSAFFIFSK
TNPIRVGCHKLINHHIFTNLILVFIMLSSVSLAAEDPIRNFSARNIILGYFDYAFTAIFT
VEILLKMTTYGAFLHKGAFCRNTFNLLDLLVVGVSLVSFCIQSSAISVVKILRVLRVLRP
LRAINRAKGLKHVVQCVFVAIRTIGNIMIVTTLLQFMFACIGVQLFKGKFYRCTDEAKSS
PDECKGTYIHFKDGDVNQPAIQKRVWHNSEFNFDNVLMAMMALFTVSTFEGWPSLLYKAI
DSNRENLGPIYNYRIEISIFFIIYIIIIAFFMMNIFVGFVIVTFQEQGEKEYKNCELDKN
QRQCVEYALKARPLRRYIPKNPYQYKFWYVVNSTGFEYIMFVLIMLNTLCLAVQHYGQSA
TFNYVMDILNMVFTAVFTAEMVLKLIAFKPRNTEDSARISITFFRLFRVMRLVKLLSRGE
GIRTLLWTFIKSFQALPYVALLIAMLFFIYAVIGMQVFGKVAMVDGTHINRNNNFQTFPQ
AVLLLFRCATGEAWQEIMLACVSGKLCDPESDYNPGEEMTCGASFAYIYFISFYMLCAFL
IINLFVAVIMDNFDYLTRDWSILGPHHLDEFKRIWSEYDPEAKGRIKHLDVVTLLRRIQP
PLGFGKLCPHRVACKRLVAMNMPLNSDGTVMFNATLFALVRTALKIKTDGNLEQANEELR
AVIKKIWKRTSMKLLDQVVPPAGDDEVTVGKFYATFLIQDYFRKFKKRKEEGLVGVHASQ
NNTAIALQAGLRTLHDIGPEIRRAISCDLQDDELVDFIPEEDEEIYRRNGGLFGNHVNHV
NGDHHRRSSSHQTNATQRPLQVQPPPHYAHMEQPVGRLCRANAMSHPNHHHHHHHHNSSY
GKSPKSTNINLNNANVSSLPNGGGHHHRYYEHAPPPANGYPGHRGGPYYPDYDKPPPRGT
PQGQRRRYYETYVRSHVGDVRHPTIRREEEFDDDRYSGEYYSGEEFYEDDSMLSGDRRSY
KEYLDRYQNSDTEYETPRGYHHPDSYYDDDEQPLYQDGRRSPKRRMLPATPQGHRRPSFN
FECLRRQGSQDELPHQRTALPLHLMQHQVMAVAGLDSSRAHRLSPTRSTRSWATPPATPA
SKEQSPYYTPLIRVDLPGRRESASSSQVSVRKSSWYTDDPEYSQRTYSPVHLQLPPEYRQ
HYHQKRGSATSLVEAVLISEGLGRYAKDPKFVAATKHEIADACEMTIDEMESAASHLLNG
GVAPAVNGVNVYPVMSERDYDLQDATASYSDEEPEVELRLPYEEDLADEMICITTL
NT seq
6291 nt
NT seq
+upstream
nt +downstream
nt
atgagcgccaacgggcccgcccctgtggccctggcttcagccccggctacaaccccagtc
gccccaccggttgcagctccggtagctgcccccacggctgccccggtcccggtgccgacc
gtcccggtgggcgcgttggcacaaaagaagcgggcgcagtacgccaaaagcaagaagcag
ggcagcaacgccaacaccaggcctgccagggccctgttctgcctcaaacttaacaaccct
atacgaagagcctgcatcagcctggtggagtggaagccatttgacatctttatattaatt
gctatatttgccaactgtatggccttagctgtgtatatccccttccctcaggatgactcc
aactccaccaaccatgacctggaaacggtagaacatgtcttcctcgtcattttcactata
gagaccttcctgaagattatcgcctatggtttagtggcgcaccagaacgcatatgtgaga
aacggatggaacatgctggattttgtcatcgtcgttgttggactgttcagtgttgtcctg
gagcttttgaccaaagactctgtagagacgaaggaggaggcagaggcgggtgcggcggcg
gcggcggcggcggcagcgctccacccctccgcgcacggccacgggggaaagtcgggcggc
ttcgacgtcaaagccctccgagccttccgtgtactgcgacccctacgcctggtctcagga
gtgcccagtttacaggttgtgttgaactccattattaaagccatggtccctctcctccac
atcgccctgctggtcctgtttgtcatcatcatctacgccatcatcggccttgagctcttc
attggcaaaatgcacgctacctgcttcttccccagcacaggcatgatagcggaggatgac
ccggctccgtgtgcgatctcagggcacgggcgccaatgtcccatcaatggcaccgagtgc
agggagggctggcacggccccaacaacggcatcaccaactttgacaacttcctgttcgcc
atgttgacggtgttccagtgcatcaccatggagggctggacagacgtcctctactggatg
aatgatgctatgggtctagagcttccatgggtctactttgtttctcttgtcatcttcggc
tccttctttgttctaaacctggttctgggagtgttgagcggagagttttccaaggagaga
gagaaggccaaggccagaggagacttccagaagctgagagagaagcagcagctggaggag
gatctgaagggttatctggactggatcacacaggctgaagacatcgacccagagaacgag
gacgaggagggcaacgaggagggaaaacgcaaccgggtgactctggctgacctcacagag
aagaagaaaggaagcaggtttgggtggttcagccagtcctccgacactcatgcgagtatg
ccagccagtgagacggagtcggtgaacacagagaacgtgaccgaggatgaggtgaagaca
ccgtgctgtggacctttttgtcaaaaaatttcaaagtcaaagttcagtcggcgctggcgt
cgctggaacaggttctgccgcaggaagtgccggttggcagttaaatcggtgcctttctat
tggctggtgatcatcctggtgtttctcaacacactcaccatctcctcagagcactacatg
cagcctgactggctcactcaagtacaggacgtggcaaacaaggttctgctgggatgtttt
acgtgtgagatgatgaccaagatgtacagtctgggcctgcaggcctacttcgtgtccctg
ttcaaccgctttgactgctttgtagtgtgtggaggcatcacagagaccatcctggtggag
ctggccatcatgtctcctctgggcatctctgtgttccgctgtgtccgccttctcaggatc
ttcaaggtcacacgtcactggcagtctctcagtaacttggtggcatcgctgctcaactcc
atgaagtccatcgcctccctgctgctcctgctcttcctcttcatcatcatcttctccctg
ctgggcatgcaggtgttcggaggcaagttcaactttgacgagacacagaccaagaggagc
accttcgataacttcccccaggcactgctcactgtgtttcagatcctgacgggtgaagac
tggaacgctgtgatgtatgacggcatcatggcgtacggtggcccttcctcatcagggatg
atcgtctccttctacttcatcatcctcttcatctgcggaaactacatcctgctgaacgtc
ttcttggctatcgctgtggacaacctgggagacgcggagtctctcaacgctccacgagac
aaaaaggaagagaaaaaggaagacttggtgccagtggaggaagaagaggagaatgctgca
gcggaggaggaggaggagccggaggttccagcagggccacgcccacccatctctgaactg
gtcaagaaggagaagatcacccccatccctgatggcagcgccttctttatcttcagcaag
accaacccgatccgggtgggatgtcataaactcatcaatcaccacatcttcaccaacctc
atcctggtcttcatcatgctcagctctgtctccctcgctgcagaggaccccatacgcaac
ttctctgctcgcaacatcatacttggttactttgactatgctttcacggctatctttact
gttgagatcctgttgaagatgaccacatacggggcgttcctccataaaggggcgttctgt
aggaacaccttcaacctgctggatctgctggtggtgggggtctccctggtctccttctgc
atccagtcctctgccatctcagtggtgaagattctgagggtcctgcgtgtgcttcggccc
ctgagggctatcaacagagccaaaggtctcaagcacgtagtccagtgtgtgtttgtggcc
atcaggaccatcggtaacatcatgatcgtcaccacgctgctgcagttcatgtttgcctgc
ataggagtacagctctttaaggggaagttttaccgctgtacagacgaagccaagtccagc
ccagacgaatgcaagggcacctacatccattttaaggacggggacgtgaaccagccggcc
atccaaaagagagtgtggcacaacagcgagttcaactttgacaacgtgctgatggccatg
atggctcttttcaccgtgtctaccttcgagggctggccttcgttgctctacaaggccata
gactctaacagggagaacctgggtcccatctacaactaccgcatcgagatctccatcttc
ttcatcatctacatcatcatcatcgctttcttcatgatgaacatcttcgtcggcttcgtc
atcgtcaccttccaggagcaaggagagaaagagtacaagaactgtgagcttgataagaac
cagcggcagtgtgtggagtatgccctgaaggcccgtccgttgaggaggtacatccctaag
aacccctaccagtataagttctggtacgtggtcaactccacagggtttgagtacatcatg
ttcgtcctcatcatgctcaacacgctctgcctggctgtgcagcactatggccagtctgca
acatttaactatgtgatggacatcctcaacatggtcttcactgctgttttcactgcagag
atggtgctcaaactcatcgccttcaaacctcggaacacggaggacagtgctcgcatctcc
atcaccttcttccgactgttccgagtcatgcgattggtcaagctgctgagtagaggggag
ggcatccgcaccctcctgtggaccttcatcaagtcctttcaggctctgccctatgtcgcc
cttctgatcgccatgctcttcttcatctatgctgtcatcggcatgcaggtgttcgggaag
gtagccatggtggatggcacccacatcaacaggaacaacaactttcagaccttccctcag
gccgtgttgttgctctttaggtgtgccacgggggaggcgtggcaggagatcatgttggcg
tgtgtgtctggaaagctgtgtgacccagagtctgactacaaccctggagaggagatgacc
tgtggagccagcttcgcctacatctacttcatcagcttctacatgctctgtgcattcctg
attatcaatttgtttgtggctgtcatcatggacaactttgactatctgactcgtgattgg
tcgatcctgggtcctcaccacttggacgagtttaagaggatctggtctgagtatgaccca
gaggccaagggcaggattaaacatctggacgtggtcactctgctccgacgcattcagcct
cctctgggcttcggcaaactctgtcctcatagagtggcctgcaagagactggtggccatg
aacatgcctctaaacagcgacggcaccgtgatgttcaatgctaccctatttgcattagta
cgcacagccttgaagatcaaaactgatggtaatctggagcaggccaacgaggagctgaga
gcggtcatcaagaagatctggaagaggaccagtatgaagctactggaccaagtggtgccc
cctgctggtgatgatgaggtaaccgtggggaagttctatgccaccttcctgatacaggac
tactttaggaaattcaagaaacgtaaagaggagggcctggtaggggtgcacgcctcccag
aacaacacagccatcgctctacaggctggccttcgcacgctacatgatatcgggcctgaa
attcgacgagcgatatcatgtgacctgcaagatgacgagctagtagactttattccagag
gaggacgaggagatttataggcgcaacggcggcctgttcggtaaccacgtcaaccacgtg
aacggggaccaccaccggcgctcatcgagtcaccaaaccaacgccacccagcggcccctg
caagtgcagccgcctccgcactacgcccacatggagcagccggtggggcgtctctgccgg
gccaatgccatgtcccaccctaaccaccaccatcaccaccaccaccacaactcctcctac
ggcaagtcgcccaagtccaccaacatcaacttgaacaatgccaacgtgtccagtctgccc
aacggaggagggcaccaccaccgctactacgagcacgctccgccccccgcaaacggttac
cctggacaccgtggcggcccctactaccccgactacgacaagccacctcctcgcggcacg
ccgcaaggacaaagaaggcgctactatgagacctatgttaggtcccacgtaggagacgtc
cgccacccgaccatccggcgggaggaggagtttgacgatgacaggtactcaggagagtac
tatagcggggaggagttctacgaggacgacagcatgttgtcaggagacaggaggtcctat
aaagaatacctggacaggtaccagaacagtgacacagagtatgagactcctagaggctac
caccaccccgacagttactatgacgacgatgagcagcccctctaccaagatggaaggagg
tcgcctaagagacggatgcttcctgccacgcctcaaggtcaccggaggccctccttcaac
tttgagtgcctgagaaggcaaggcagtcaggacgagctaccacaccaacgcactgcacta
ccactgcacctaatgcagcaccaggtgatggctgtagcagggctggactccagcagagcc
caccgtctctcccccacccgctccacccgctcctgggccactccccccgccactccggcc
agtaaggaacagtcgccctactacacgcccctcatcagggtcgatctccccggacgcagg
gagagcgcctccagcagccaggtgtctgtgaggaagagttcgtggtacacagacgaccca
gagtactcccagaggacctactcccccgtccacctccagctgcctccagagtaccgacag
cattaccaccagaagagaggcagtgctaccagcctggtggaggcggttttgatatcagag
gggctcgggagatacgccaaggatccaaagttcgtggcggccaccaagcacgagatagcg
gacgcatgcgagatgaccattgacgagatggagagcgcggccagccacttgctgaacggc
ggtgtggcgccggcggttaatggggtcaacgtgtaccccgtcatgagcgagcgggactac
gacctccaggacgccacggccagttacagtgacgaggagccggaggtggagcttagatta
ccgtacgaggaggacctggcagacgagatgatctgcatcaccactttatag
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integrated database retrieval system
