Salvelinus namaycush (lake trout): 120065487
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Entry
120065487 CDS
T07522
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1-like
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
120065487
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
snh03021
]
120065487
03036 Chromosome and associated proteins [BR:
snh03036
]
120065487
Transcription machinery [BR:
snh03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
120065487
Chromosome and associated proteins [BR:
snh03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
120065487
PBAF complex
120065487
GBAF(ncBAF) complex
120065487
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
Motif
Other DBs
NCBI-GeneID:
120065487
NCBI-ProteinID:
XP_038872460
UniProt:
A0A8U1H8R4
LinkDB
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Position
Sna20:51157789..51189676
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AA seq
514 aa
AA seq
DB search
MAARGSFQSAPTGGGGGGMGPGPQVQGGGPGMGPGTPGGRMGLSSGAQNHLYRSPMPGPG
YPRPGGMPPSSRMTPQGPPMGPPGYGSSPVSRPGMPGVMDPSRKRPAPQQVQQVQQQRNQ
HTKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRK
LRIFISNTFNPAKPDAEDGEGTVASWELRVEGRLIEDTAVSKYEATKQKRKFSSFFKSLV
IELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVGVRCTVLLMLDYQPPQFKLDPRL
ARMLGIHTQTRPVIIQALWQYVKTHKLQDPHEREFINCDKYLQQIFETQRMKFSEIPQRL
HALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIAGLD
NKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVANPEEERRAEF
YFQPWAQEAVCRYFYSKVQQRRQELEQALGIRNT
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atggcggccagaggtagttttcaatcggctccaacgggaggtggtggcgggggaatggga
cccggaccccaggtgcaaggtggaggaccaggcatgggacctggaactcctggtggaagg
atgggactctcatcgggcgcacagaaccacctttaccgatctccgatgcctgggcctgga
tacccgagaccaggtgggatgccaccctccagccgtatgacaccccagggtccgcccatg
gggcctccaggctacggctccagccccgtgtcccggccagggatgcctggcgtcatggat
ccctcccgtaagagacctgctccccagcaggtccaacaggtccagcaacagcgcaaccaa
cataccaagaagaagaaaatggcggataagattttacctcagaggatccgggagctggtg
ccagagtctcaggcctacatggacctgctggcgtttgagaggaagctggatcagaccatc
atgaggaaacgtctggacatccaggaggcactcaagagacccatcaagcaaaaacgaaag
cttcgtatcttcatatccaacaccttcaaccctgccaagcccgacgcagaagacggagag
ggcactgttgcatcatgggagctgcgtgtcgaagggcgcctaattgaagatactgctgtg
tccaagtatgaagccaccaagcagaagagaaagttctcttccttcttcaagtctctggtc
atcgagttggacaaggacctctatgggcctgacaatcacttggtcgagtggcacaggact
gcgaccactcaggagacagacgggttccaggtgaagaggccaggggatgtgggcgtacgc
tgcactgtcctgctcatgctggactaccagccccctcagttcaagctggaccctcgcctg
gcccgtatgttggggatccacacccagaccaggccggtcatcatccaggccctctggcaa
tatgttaagacccacaagctgcaggacccccacgagagagagttcatcaactgtgacaag
tacctgcagcagatctttgagacccagcgtatgaagttctctgagatcccacaacgtcta
cacgctctgctgatgcctccagaacctatcatcattaaccatgtcatcagtgtggatccc
aacgaccagaagaagacggcctgctatgacatcgatgtggaggtggacgacactctaaag
acccagatgaactccttcctcctatccaccgccagccagcaggagatagctggcctggac
aacaagatccatgagaccatagagacgatcaaccagctgaagacccagagagagttcatg
ttgagcttcgccagagatccccagggcttcatcaacgactggctgcagtcacagtgccgg
gacctcaagactatgactgatgtggttgcgaacccagaagaggagaggagagcagagttc
tatttccaaccctgggcccaggaggccgtgtgtcgttacttctactccaaggtccagcag
aggaggcaggagctggaacaagccctgggaatcagaaacacttag
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