Salvelinus namaycush (lake trout): 120065560
Help
Entry
120065560 CDS
T07522
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 6-like
KO
K14436
chromodomain-helicase-DNA-binding protein 6 [EC:5.6.2.-]
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
snh03036
]
120065560
Chromosome and associated proteins [BR:
snh03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
120065560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
Helicase_C
Chromo
ResIII
DEAD
HDA2-3
HTH_CHD1_Hrp3
Chromo_MIT1
BRK
Motif
Other DBs
NCBI-GeneID:
120065560
NCBI-ProteinID:
XP_038872553
UniProt:
A0A8U1H6S6
LinkDB
All DBs
Position
20:4499377..4569311
Genome browser
AA seq
2978 aa
AA seq
DB search
MSTTHSQKYTPATAASNATAQNAQTPFPRGTLGSKDQIRDLGGGQTNHCMANSKHPRMGE
AGTSSASLSPCAPSSPLNSEEDDGGGGRWAKKKRKKKDKRGEPGIAWQHKGLERDMKPNK
KKEQKEEKELLLRNFKEPRKVKAPKEVKRGRKPKAQALPHPPSECKSAPSPSRQRGRKPR
AQVFQGPVPAEKKKKGKRKSEAVLQEAGDRDNVTFLSALAIGGEESIDPLDNTKRRSGRQ
VKRRKYNEDLDFKVVDDDGETIAVLGTGRIPALNAATITWQAEEPPEDEANVIEKILSVR
TVKKEASPEDATEESEEFYVKYRNFSYLHCKWATLEELEKDPRIQQKIKRFRTKHAQMKH
IFVEPNEDLFNPDYIEVDRVLEVAITTDTETGEEVTHYLVKWCSLSYEEATWELQEDVDP
VKIREFEEIKRIPELKFVERPQPDKWQKLDKSKDYRNGNQLREYQLEGMNWLLFNWYNRK
NCILADEMGLGKTIQSITFLFEMFSMGLRGPFLIIAPLSTITNWEREFRTWTEINVIVYH
GSQISRQMIHQYEMYHKDQQGNVVLGGYKFHGVITTFEMIMADCPELKKIHWRCVVIDEA
HRLKNRNCKLLEGLKLMNLEHKVLLTGTPLQNSVEELFSLLNFLEPLQFPSESLFLEEFG
DLKTEEQVKKLQAILKPMMLRRLKDDVEKNLAPKEETIIEVELTNMQKKYYRAILEKNFT
FLAKGANQHNMPNLINTMMELRKCCNHPYLIKGAEEKILDSFRKTHSPDAWDFQLQAMIQ
AAGKLVLIDKLLPKLIAGGHKVLVFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQA
AIDRFCKVDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSK
AVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKGSLNGAQQMTKIEVEDLLRKGA
YGALMDEEDEGSKFCEEDIDQILQRRTQTITIETEAKGSTFAKASFVSSGNRTDISLDDP
NFWQKWAKITELEIDSKAEKESLVIDTPRVRKQTRHYNSFEDDELMEFSELDSDSEERPC
RTRRFSERSRRYLRADCFRVEKNLLIFGWGRWKDILTHGRFKWQLGERDMEVLCRALLVY
CVRHYMGDDKIKSFIWDLITPAKDGHKQDLQNHSGLSAPVPRGRKGKKLKNQLSVPEMKH
ADWLVNCNPEVVLQDDSYKKHLKQHCNKVLLRVRMLYYLKAEVLGETAAQFLEGIHASKL
EVALPDIDYIEIPAGWWDAEADKSLLLGVHKHGYERYNAMRADSELCFLERVGMPDVTAL
SAEQSGGEVVADLTDSACKSDDVKDDPECNLEEGGVEKVDNKDETSSSNDAMDKHDSVGQ
DTLSVEMVQESFGQEGMELKGRPLWPAGPALTARLRRLITAYQRFMRREPLRHDFLLPEG
LGAGLGTMSWQLGEEIRRCSVAAAEPDPLFLEWQRRWTRREQADFYRTVSSFGVVYDPEK
KTLDWSPFRSFARLERKTDESLERYFSSFVSMCRSACRLPPRKDEGPLDHNLFVEPITEE
RAARTLYRIELLRKVREQVLRHPLLGSRLQLCRPSLYLPVWWECGKHDRDLLIGAARHGL
SRTDCYILNDPQLSFLDAHRNYVQKENHQGYQPSVHHAGMAPSPHHHPCCIYETGLGQCH
SPQPPEYGHPAIPSSSIHFHSHPNVHGHPPEIVGMGPGGSLGMVSGPREGFLVCPPLDES
LELASLQHEGLASDSLHGKSAKEAFNGFPFNSAQGGQSMLNSYGVQAELTSEQSADMDPI
ISGKLRSDVLVGSSEENGLMAPLLELEQELQAPWESTDHTGTADVVGMFNEADPILGAPA
LDTEFLDTEEQPGDGGREDGAGGVLDDCLGIPSSRSGPGEPLPSSFMLFKNIDVSEEEPA
AEHTNLSASPLPSYIPPPHLSLSHLTLHPHHHNQGDVEQPEKLSDSDTVAHVPSPDEREA
ERDVSFQFDKEMSVDSPSLVGLEQGLDPSCIPCEDTLQEEPCYGMGMGSPVESCQVALER
PGEETLERDTPLGPVEGLLEGQVEEPLEISPMDSQEEEPVDGPLEDFGKDKAPEGPFTGP
LEQYDVEPEADFEGPAEAESTLSEHTLPTVDATDTLPPSSSVPRPQPEPPLSPRVVGVTQ
IKLEFPLDPESSESKSDILEPDSTVLTPKLEQTEVLLEVKDKIKEERPQTPASLVDSYVE
VAQFAVPMSMCEMPDSLQDVREPTIAQLLQEKALYSFSEWPKDRVIINRLDSICHAILKG
KWPSSSQQYDSPSSLANTCVPNIVHQRAGFISARVQPSQSLNFNIPAPPVTHLPKYKSRD
AGECSQGGWRLTSLPLLQERLVAPPYLPELKRGRRAFEYKAEVLSKQCHTGEKMPVTVSN
RGGALLLKGWQEAAMDLSKAGDLGIGGDAAATVGHMSHQVLPGARKLPAMSAMQGSVGKD
MAGILQAGLIHPVTGQIVNGNLRCDDAIMRRRRGRRRNVEAVDIGFVKSRGMHVQEKQVT
SHSAVSSTSSPPERPPGTSTPTLPEVVAIDREAANNGLMEWLRQNPNCSMEVPTFAPSPG
SAILHSFVERPKQRRHRCKDPTKLDVNSLTGEERVPVVHRSTGRRGFLPEGKFTRILTEP
VSRDQGPRRRGRRPRSEMPKPLLSESPMGPLCMNGGLIGSMDLVSLQNLHNVQGIPLTSL
MGFPHGFAVSAGEDAKNGLSMLPMMLHGVHGAPHMFSVQGLMGLPPTCSASTSSSTAVVT
TTAASSSAASSPSRGPGQASSSTGAEGSGIQSGRERKREEKQQGAMGSHSIAAITTTTAT
SSSSGSHQAFNPFLIPGMSHGLLYPHMFLPHGGVMALPGMPPADSSISPKTKKKRTREEG
VVVVVVEAGSHSHLQTDSGPPKKHSDGQTGESTADQAGPEDREQMEDNIQEGGTGHDSHD
PPEVNPKKSVEEERGTMEISLMEEKKLPEEESVSRGAE
NT seq
8937 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccacccactcacaaaagtacactccagctacagcagcctctaatgcaactgcc
caaaatgcacaaactccatttcccaggggaaccctgggctctaaggaccagatcagggac
cttggtggtggtcagaccaatcactgcatggccaactccaagcaccccaggatgggcgag
gcgggcaccagctcggccagcctcagcccctgcgccccctcgtcacccctcaacagcgag
gaggatgatggagggggcgggcggtgggcgaagaagaaacgaaagaaaaaagacaagcgg
ggcgagcctggcattgcctggcagcacaagggcttggagagagacatgaaaccaaataaa
aagaaggagcagaaagaagagaaggagctgctgctgcgcaatttcaaggagcccaggaag
gtgaaggcaccaaaagaggtgaagagagggagaaaacccaaggcgcaggccctgccccat
cctccttcagaatgcaagagcgccccctctccttccagacagaggggccgcaaacccaga
gcgcaagtcttccaagggccggtcccagcggagaagaagaaaaagggcaagcggaaaagc
gaggcagttctccaggaggctggggatagagataatgtgaccttcctgtccgcgctggcc
atcgggggagaggagagcatcgatcccctcgacaacacgaagcgtcgctcggggcgacag
gtgaagcgcaggaagtacaatgaggacctggacttcaaggtggtggatgacgacggggag
actattgctgtgctggggacgggccgtatccctgccctcaacgctgccactatcacctgg
caggctgaggagccccctgaagatgaggcaaacgttattgagaagatcctgtcggttcga
actgtgaagaaagaggcgtcccctgaggatgcaactgaggagtccgaggagttctatgtc
aagtacagaaatttctcctacctgcattgtaaatgggcgacattggaggagttggagaag
gaccctcgcatccagcaaaaaatcaagcgcttcaggactaagcatgcccaaatgaagcac
atattcgttgagccgaatgaagacctctttaaccctgactacatagaagtggatagagtt
ctggaggtggccatcacgacagacacagagacaggagaggaggtgacacactacctggtg
aagtggtgctccctgtcctatgaggaggctacatgggagcttcaggaagatgtggacccg
gtgaagattcgggagtttgaggagatcaagagaatccctgaattgaaatttgtggaaaga
cctcagccagacaagtggcagaagctggacaaatccaaagactatcgaaacgggaaccag
ctgagagagtaccagctggagggcatgaactggctgctcttcaactggtacaacaggaag
aactgcatcctggctgacgagatgggcctggggaagaccatccagtccatcacgttcctc
tttgagatgttctccatgggcctgcggggacccttcctcatcatcgcccccctttccacc
atcaccaactgggagagggagttccgcacctggactgagatcaacgtcattgtctaccac
ggcagccagatcagtcgccagatgatccaccagtatgagatgtaccacaaggaccagcag
ggaaatgtagtgttgggcgggtacaagttccacggagtgatcaccacctttgagatgatt
atggccgactgcccggagctgaagaagatccactggcgctgcgtggtcatcgatgaggcc
caccgcctcaagaaccgcaactgtaaactcctggagggcctcaagctcatgaacctggaa
cacaaggtcctcctgacaggcacccccctgcagaactcagtggaggagctctttagtctg
ctcaacttcctggagcccctacagttcccctcagagagcctcttcttggaggagtttgga
gatctgaagactgaggaacaggtgaagaagcttcaggccatcctgaagcccatgatgctg
cggcggctgaaggatgacgtggagaagaacctggcgcccaaggaggagaccatcatcgag
gtggagctcaccaacatgcagaagaagtactaccgggccatcctggagaagaacttcacc
ttcctggccaagggggccaaccagcacaacatgcccaacctcatcaacaccatgatggag
ctgcgcaagtgttgcaaccacccgtacctgatcaaaggtgcggaggagaagatcctggat
agcttcaggaaaacgcacagccctgatgcttgggacttccagctccaggccatgattcag
gcggcggggaagctggtgcttattgacaagctgctgccgaagctgattgctggcggccac
aaggtgctggtcttctcccagatggtgcgctgcctggacatcctggaggactacctcatc
cagaggaggtacacctatgagcgcatcgacggcagagtgcggggtaacctgcgccaggca
gcgatcgacaggttctgtaaggtggactcggaccgctttgtgttcctgttgtgtacccgt
gctgggggcctgggcatcaacctgaccgctgcagacacctgcatcatcttcgactcggac
tggaacccccagaacgacctacaggcccaagctcgctgccaccgcatcggccagagtaaa
gcagtgaaagtgtacaggctgatcaccaggaactcctatgagagggagatgtttgataaa
gccagtctgaagctggggctagacaaggctgtgctgcaggacattaatcgaaagggcagc
ctcaatggggcgcagcagatgaccaagattgaggtggaggacctgctgaggaagggggcg
tatggcgcactgatggatgaggaggacgagggctccaagttttgtgaggaggacatcgac
cagatcttgcagcgccgcacccaaactatcaccatcgagacagaggccaagggctccacc
ttcgccaaggccagctttgtgtcttctggaaacagaactgacatttccctggacgatccc
aacttctggcagaaatgggccaaaataaccgagctggagattgactccaaagcagagaag
gagagcctggtgattgatacgcctcgtgtgaggaagcagactcgtcactacaactcgttc
gaagacgacgagctgatggagttctctgagctggacagcgactcagaagagaggccctgt
cgcacccgccgcttcagcgagaggagcagacgctacctccgcgccgactgcttccgcgtc
gagaagaacctgctcatattcggctggggtcgctggaaggacatcctgacccacgggcgc
ttcaagtggcaactgggtgagcgtgacatggaggtgctgtgccgggcactgctggtctac
tgcgtgcgtcactacatgggcgatgacaagatcaagagctttatctgggacctcatcaca
cctgccaaggatggccataaacaagacctgcagaaccattctggcctgtcggccccagtg
cccaggggacgcaagggtaagaagctaaagaaccagctgagcgtgcccgagatgaagcat
gcagactggcttgtcaactgcaacccagaggtagtgctacaggacgacagctacaagaaa
cacctcaagcagcactgcaacaaggtacttctgagggtgaggatgctgtactacctcaag
gcggaggtcctgggagaaactgctgctcagttcctggagggcatccatgccagtaaactg
gaggtggcactgcctgatattgactacatcgagatcccagcaggctggtgggatgcagag
gcggataagtctctcctcttaggagtgcacaaacacgggtatgagcgatacaatgccatg
cgggccgactcagagctatgcttcttggagcgggtgggcatgcctgacgtcacggcgctc
tcagccgagcagagtggaggagaggtggtggctgacctcactgacagtgcttgcaaaagt
gatgatgtgaaagacgatcctgaatgcaatctggaggagggaggagtggaaaaggttgat
aataaggatgaaaccagctccagtaatgatgcaatggacaagcatgacagtgttggtcaa
gacacactctcagtggagatggtccaggagagctttggccaggagggcatggagctaaag
ggtcgccctctgtggccggccggccctgcccttacggccaggctacgtcgcctcatcacg
gcctaccagcgcttcatgcggcgtgagccgctgcgccacgacttcctgctacctgaaggg
ctgggggcaggcctggggacgatgtcctggcagctgggggaggagattaggcgttgctcg
gtggccgccgccgaacctgaccctctcttcctggagtggcagagaaggtggacacggcgt
gagcaagcagatttctaccgcaccgtgtcgtcgttcggtgtggtgtacgacccggagaag
aaaacattagactggagtcctttccgctcctttgcccggttggagaggaagaccgacgag
agcctggagagatacttcagtagctttgtgtccatgtgccgcagcgcctgcagattgccc
cccaggaaggacgaagggcctctggaccacaacctgtttgtggagcccatcacagaggag
cgagcagcacgcaccctctaccgcatcgagctgctgcgcaaggtcagggagcaggtgctg
cgccacccactgctgggctcgcgactgcagctgtgtcggcctagcctctacctgcctgtg
tggtgggagtgtggcaagcatgaccgcgacctcctgattggagcggcccgccacggcctc
agccgcactgactgctacatcctcaatgacccgcagctatctttcctggatgcccatcgc
aactacgtccagaaggagaatcaccagggctaccaacccagtgtgcaccacgcaggcatg
gccccctcaccgcaccaccacccctgctgcatctatgagacgggcctcggccaatgccac
tctccccagccgccggagtacggtcacccagccatcccctcctcgtcgatccacttccat
tctcacccgaacgtccacggtcacccaccagagatagtgggcatgggccccggtggcagc
ctaggtatggtgtctgggccaagggagggcttcctggtttgccctcctctggatgagtca
ttggaactggcatcactgcagcatgagggcctggcctcagattccctccatggcaagtct
gccaaggaggccttcaacgggttccccttcaactcagcgcagggcggccagagcatgctc
aactcgtatggtgtgcaggcggagctgaccagcgagcagtcggctgacatggacccaatc
atctcaggcaagctgcgcagcgacgtgctggtgggctcctcggaagagaatggccttatg
gctcccttgctggagctggaacaggagctgcaggcgccctgggagagcacggaccacaca
ggcacagcagacgtcgtgggcatgttcaacgaggccgaccccatcctgggggcaccagcc
cttgatacagagttcctggacacagaggagcagccgggagacgggggaagggaggacgga
gcagggggagtgcttgacgactgcctaggtataccctcatcccggagcggcccaggggag
ccgctgccctccagtttcatgctgttcaagaacattgacgtgagcgaggaggagcctgct
gcagagcacacaaacctctccgccagcccgcttccttcctacatcccccctccgcacctg
tcgctgtcccatctgaccttgcacccccaccaccacaaccagggtgatgtcgagcagcca
gagaagttgagtgactcggacactgtcgcccacgtgcccagccccgacgagagggaggca
gagagggatgtgtcctttcagtttgacaaggagatgtctgtggacagtccaagtctggtg
gggctggagcagggcctggacccctcatgtataccatgcgaggacactctccaagaggag
ccctgctatgggatgggaatgggctctccagtggagtcatgtcaggtggctctagagagg
ccaggagaagagactttagaaagggacacgcccttagggccagttgaggggcttctagag
ggacaggtagaagaacccttggagatatcgcccatggattcccaggaggaggaaccagtg
gatgggcctctggaagacttcggtaaagacaaagcaccagaaggaccattcacagggccg
ttggagcagtacgacgtagaaccagaagctgacttcgaggggcctgccgaagcagagagc
actttaagcgaacacacactccccactgttgacgctacagacactctgcccccatcctcc
tcagtccccaggccccagcctgagccaccactgtccccacgtgtggtgggagtgacacag
atcaaacttgagttccctctggacccagagagctctgagagcaagtcagacatactggag
cctgacagcactgtcctcacgcccaaactggagcagacagaggtgctgctggaagtgaag
gacaagatcaaggaggagaggccccaaactccagcctctctagtggacagctatgtggag
gtggcacagtttgcagtccccatgtccatgtgtgagatgcctgacagtctgcaggacgtg
cgggagcccaccatcgcccagctgctgcaggaaaaagccctctactccttctccgagtgg
ccaaaggatcgggtgatcatcaaccgcctggacagcatctgtcacgccatcttgaagggg
aagtggccctcttccagccagcagtatgactcccctagctctctggcaaacacctgtgtg
cctaacattgtgcaccagagggctggcttcatttcagccagggtacagccatcccagagc
ctcaacttcaacatcccagcccctcctgtaacccaccttcccaagtacaagtcaagagat
gcaggggaatgcagccagggaggctggaggttgacatccttgcctctcttgcaggagagg
ctggtggcgccgccctatttgcctgaactaaagcggggtaggcgtgcgtttgaatacaag
gcagaggtgctcagtaagcagtgccacacaggggagaagatgcctgtaaccgtgtcgaac
agaggcggggcgctgctgctcaaaggctggcaggaggcggccatggacctctccaaggcc
ggggatctgggcattgggggcgacgcggcagccactgtaggccacatgagtcaccaggtc
ctccccggtgcccgaaaactgcccgccatgagcgccatgcagggttcagtggggaaggac
atggccgggatcctgcaggcaggtctcatccaccccgtcaccggccaaattgtcaacggc
aacctgaggtgtgacgacgcaatcatgcgccggaggagaggcagacggagaaacgtggag
gcggttgacatcgggtttgtcaagagcagaggaatgcatgtgcaggaaaaacaggtcacc
agccattctgcagtgtcgtccacctcctccccaccggagcgccccccgggaacctccacc
cccaccctgccagaggtggtggccatcgacagagaggctgccaacaatggcttgatggaa
tggctgcgacagaatcccaactgtagcatggaggtgcccactttcgcaccgtctcctggc
tcagcgattctgcacagctttgtggagcggcccaagcagcggcggcatcgctgtaaagac
cccaccaagctggatgtcaactccctaacaggggaagagagggtgccagtggtccacagg
agcactggccgcaggggctttcttcctgagggcaagttcacccgcatcctcactgagccc
gtgagccgcgaccaggggccccgccgccggggccgtcgtccccgcagcgagatgcccaag
cccctcctctccgagtctcccatgggcccgctctgtatgaacggcggcctgatcggcagc
atggacctggtcagcctccagaacctccacaatgtccagggcatcccactcacaagcttg
atgggattcccccatggctttgctgtgtccgccggtgaagacgcaaagaatggtctgagt
atgctgcctatgatgctccacggcgtacacggcgccccccacatgttcagtgttcagggg
ctgatggggttgccgcccacctgctctgcttccacctcttcctccacagctgtagttacc
accactgcggcctcctcctcagcggccagtagcccctctcgaggccccggccaggcatct
tcaagcacaggggccgagggctctggcattcagtctggcagagagagaaagagggaggaa
aagcagcaaggcgcgatgggcagccacagcattgcggccatcaccaccaccacagcgacc
agcagcagcagtggcagccaccaggccttcaaccctttcctcattccggggatgtcccat
ggactgctgtaccctcacatgttcctcccgcacgggggcgtcatggcgctgccaggcatg
ccgcctgcagactcctccattagcccaaagacgaagaagaaaagaacaagggaggaaggg
gtggtggtggtggtggtggaggcaggcagccacagccacttacagacggacagtgggcct
ccgaaaaaacacagtgatggccagactggggagagcacggctgaccaggctgggccggag
gacagggagcagatggaggacaacattcaggagggcggcacgggacacgactcccatgat
cctccagaggtaaaccccaagaagagcgttgaagaggagagaggaacgatggagattagc
ttgatggaggagaaaaaactgcctgaggaggagagcgtgtcaaggggggcagagtag
DBGET
integrated database retrieval system
