Salvelinus namaycush (lake trout): 120065699
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Entry
120065699 CDS
T07522
Name
(RefSeq) cadherin-4-like
KO
K06797
cadherin 4, type 1, R-cadherin
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
120065699
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
snh04515
]
120065699
Cell adhesion molecules [BR:
snh04515
]
Cadherins
Major cadherins
120065699
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
CADH_Y-type_LIR
Cadherin_4
Fibulin_C
He_PIG
Stevor
DUF5527
Motif
Other DBs
NCBI-GeneID:
120065699
NCBI-ProteinID:
XP_038872703
UniProt:
A0A8U1H6X4
LinkDB
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Position
Sna20:16136922..16203354
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AA seq
781 aa
AA seq
DB search
MIARAWDSNPRVIKFPRKHQRSSSANGLRRQKRDWVIPPINVPENSRGPFPQMLVRIRSD
QDLEKGIRYSITGAGADQPPIDVYNIDPVHGKMFVTRPLDREERASYHLRAHAVDMNGNK
VESPIDLYIYVIDMNDNRPEFQNQVYNGSVAEGSKPGTLVMQVTANDSDDDTTANGMVRY
RILSQTPHMPIPNMFTINSETGDIFTVAAGLDREKVSQYTIIVQATDMEGNLNFGLSNTA
TALISVTDINDNPPELTARTFSGEVPENRVNVVVANLTVIDRDQPHSPNWAAQYRIASGD
PQGHFLIRTNPVNNDGMVTVVKPVDYEQNRAFMLTVIVSNKAPLASGIQSSLQSSAGVTI
SVQDVNEPPVFPSNPKSIRFEEGVPAGTTLTVFAAQDPDLFIHQTVRYSKLSDPANWLRI
NRTNGQITTMAVLDRESMYVRNNIYEATFLAADNGSPPASGTGTLQIHLIDVNDNAPVLL
PKEAQVCERASPRSRVNITASDADADPHVGPFVFELPSYPPSVRRNWTASRISGDYAQLR
LRIPYLDAGVYDVPIIVSDSGNPPLSNRSMIKVKVCPCDDNGDCTTTGAVAAAGLGTGAI
IAILICIIILLTMVLVFVMWMKRREKERQAKPLLIDPEDDVRDNILKYDEEGGGEEDQDY
DLSQLQQPEALDHIICKPTGVRRVDERPVIAESQYPVRPSLPHPGDIGDFINDGLRAADN
DPTAPPYDSLLVFDYEGSGSTAGSVSSLNSSSSGDQDYDYLNDWGPRFKKLADLYGGGDD
D
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atgattgcaagggcctgggactctaatcccagggttatcaagtttccacggaaacatcaa
agaagctcttctgccaatggtctgagacgacagaagcgagactgggtcatcccaccaatc
aatgtgcccgaaaactctagaggacccttcccacaaatgcttgtcagaatccgctcggac
caggacctggagaaagggatacgctacagcatcactggagcaggggcggaccagcctccc
attgacgtgtacaacatcgaccctgtgcacggcaagatgtttgtcaccagacccctggac
agagaggagagggcctcctaccatctgcgggcccatgctgtggacatgaacgggaacaag
gtggaaagccccatagacctgtacatctacgtcatcgacatgaatgacaaccggccagag
ttccaaaaccaggtctacaacggctctgtggctgaaggctctaaaccaggcacgttagtg
atgcaggtgaccgccaacgactcagatgacgacaccacagccaatgggatggtgcggtac
cggatcctatcccagaccccccacatgccaatccccaatatgttcaccatcaacagcgag
acgggagacatcttcacggtggccgccggcttggacagggagaaagtgtcccagtacacc
atcatcgtccaggccacggacatggaggggaacctgaactttggcctgtccaacacggcc
accgccctcatctctgtgaccgacatcaacgacaaccctcccgagctgaccgccaggacg
ttttcgggggaggtcccagagaacagggtgaatgtggtggtggccaatctgacagtgatt
gacagggatcagcctcacagccccaactgggctgcccagtaccgcatcgccagcggagac
ccccagggtcacttcctcatccgcaccaaccctgtcaacaatgacggcatggtcactgtg
gtcaagccagtggactatgagcagaacagggccttcatgctcacggtgatagtctctaac
aaggcccctctggccagtgggatccagtcttctctccagtcttcagcgggggtcaccatc
tccgtacaggatgtcaacgaaccccctgtcttcccttccaaccccaagtccatccgtttc
gaggagggtgtccctgcaggcaccacactcaccgtgtttgctgcccaagaccctgacctc
ttcatccatcagactgtccggtactcgaagctgtctgacccagctaactggctgaggatc
aacaggaccaacggtcagatcaccaccatggccgtgctggacagggagtccatgtacgtc
aggaacaacatctatgaggccaccttcctggctgccgacaatggctctcccccagccagt
gggacaggtactctacagatacatctgatagatgtgaatgacaacgctccagtgctgttg
cccaaggaggcccaggtgtgtgaacgggccagcccccgctccagggtcaacatcacagcc
tccgacgccgacgctgaccctcacgtggggccttttgtgttcgagctgccctcctaccct
cctagcgtccgacgcaactggaccgcctcccgcataagcggtgactatgcccagctgaga
ctgaggattccctacctggatgcaggggtgtatgatgttcccatcatagtgtcggactct
gggaacccgcccctctctaacaggtctatgataaaggtcaaggtgtgtccgtgtgacgac
aacggagactgtactaccaccggagctgtagctgccgctggactggggaccggagcgatc
atagccatactcatctgtatcatcatactgcttacaatggtactggtgtttgtgatgtgg
atgaagcggagggagaaggagcgtcaggccaagcccctgctgattgacccagaggacgac
gtcagagacaacatcctgaaatacgatgaggagggaggaggagaggaggaccaggactat
gacctaagccagctgcagcagcccgaggctctggaccacatcatctgtaaaccaacgggg
gtgcgcagagtggacgagaggcctgtcatcgctgagtcccagtaccccgtcagacccagc
ctgcctcatcccggagatatcggagacttcatcaacgacggtttgagggcagcagacaac
gaccccacagctccgccctatgactccctgctggtgtttgactacgagggcagcggctcc
acggccggctccgtcagctccctcaactcctcaagctcaggggaccaggactacgactac
ctcaacgactggggcccccgcttcaagaagctggcagacctctacggcggaggagacgac
gactga
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