Salvelinus namaycush (lake trout): 120065718
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Entry
120065718 CDS
T07522
Name
(RefSeq) LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding protein 5-like
KO
K14435
chromodomain-helicase-DNA-binding protein 5 [EC:5.6.2.-]
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
snh03036
]
120065718
Chromosome and associated proteins [BR:
snh03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
120065718
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDII_SANT-like
CHDCT2
Helicase_C
DUF1087
PHD
CHDNT
Chromo
PHD-1st_NSD
ResIII
HDA2-3
PHDvar_NSD
DEAD
PHD_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
120065718
NCBI-ProteinID:
XP_038872730
UniProt:
A0A8U1H909
LinkDB
All DBs
Position
20:complement(23115218..23138785)
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AA seq
1997 aa
AA seq
DB search
MKEGKMPKVKKRKKEGGGGGGVGGGGSDLKEQAPEREDDRPLQGPEIGSESESSTYAPTT
KKKKKPKEKKPKRKKREEEEEDDDDDDDEDDENNKEPKSSSQLMQEWGLEDVQYGFTEED
YTTLTNYKAFSQFLRYCTCRIIIYCLSYYSVLSLTFLRPLIAKKNPKIPMSKMMTVLGAK
WREFSANNPFKGTSATAVAAAVAAAVETVTVASPTSVKEITTLSSSQPGQIRKAKTKDGK
GPGVRRKTKTVKEVKKKSKGKKTKSKKKASSSEEDFGLEESDFDDVSIHSASVRSDTSGN
AKKKARKGRKKRKREDGDGYETDHQDYCEVCQQGGEIILCDTCPKAYHLVCLDPELEKAP
EGKWSCPHCEKEGIQWEAKDDDDEEEEVAVEEEDDHLEFCRVCKDGGELLCCDTCPSSYH
IHCLNPPLPEIPNGEWLCPRCMCPPPKGKVQRILHWIWGDPPLPMEVPPGPNGETVDPLV
KPPLKGHPERELFVKWAGLSYWHCSWVSELQLELYHAVMYRNYQRKNDMDEPPPYDYGSG
EEELNNEKRKSKDPQYAAMEERFYRYGIKPEWMVIHRILNHSYDKDGDVHYLIKWRDLPY
DQCTWEVDDFDVPEYHNAKHSYWDHREQMIGDDQRPLVVRKGKKGKEEEKRREREIPPNA
PIIDPTIKFEHQPWYINATGGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIV
FLYSLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRAVIRENEFTF
EDSAVKTGRKVFRMKKDTAIKFHVLLTSYELITIDQTILGSINWACLVVDEAHRLKNNQS
KFFRILNGYKIYYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLDGFLEEFADISKEDQI
KKLHDLLGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKFILTRNFEALNSKGGG
NQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGNQLVKSSGKLTLLQKMLRKLK
DEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFL
LSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEER
ITQVAKRKMMLTHLVVRPGLGSKTGSMSKQELDDILKFGTEELFKDEMEAAARAMGSHQK
LCKNNGDIKDGDEGSVIHYDDNAISKLLDRSQNATEDTEIQNMNEYLSSFKVAQYVVKDE
DAEVRTHSHTQSAWALLCLGVALLCILTVCMCEYSAVSSLYSHXLPEEPQREIIKQEENV
DPDYWEKLLRHHYEQQQEDLARNLGKGKRIRKQVNYNDTSQEDQEWQDDLSDNHSEYSVG
SEDEDEDFEERPEGGRRHSRRQLKSDRDKPLPPLLARVGGNIEVLGFNARQRKAFLNAIM
RWGMPPQDAFNSHWLVRDLRGKSEKEFRAYVSLFMRHLCEPGADGAETFADGVPREGLSR
QHVLTRIGVMSLVRKKVQEFEHVNGKYSTPDLIPIGLDLKKLTESLSSDPNTPVPASPAA
TPQPPGSPVPPEKMDSISGPAEDKEPTEQECKKLPELEVRSSSQVEKTDIAPDSDETAKG
STEDKPVSSEESSEMTDIPSALIEPSINPKEPPSIHTELSSNQSSPKAEPCRETEKSLEK
GDSDPAPAKPEEKELNPVVSDEAKSEDLLVPDGRLNGEKEAQEEMEEVRRELLEKNGFKM
RFMFNIADGGFTELHTLWQNEERAAVSSGKMYDIWHRRHDYWLLAGIVTYPLPXLLEQAL
VIEEQLRRAAYLNMTQDPSHPAMALNTRFAEVECLAESHQHLSKESLAGNKPANAVLHKV
LNQLEELLSDMKADVTRLPNMLSRIPPVSSRLQMSERSILSRLTSRGNEPPPQQPFGQGS
FACSQMYSTGFGGSFRGPAGEAMVNYSQMPLGPYVSVSNGPPPPSSHLDKKSCDHLRDVT
TPDLKSGKPSDVICIED
NT seq
5994 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaggggaagatgcccaaagtcaagaagaggaaaaaggagggaggaggaggtgga
ggagtaggaggtggtggcagtgacttgaaggagcaggcccctgagcgggaggatgaccgt
ccactgcagggtccagagattggctcagagagcgagagcagcacctacgcccctaccaca
aagaagaagaagaaacctaaggagaagaaacccaaacggaagaagagagaagaggaggag
gaggatgacgatgatgatgatgacgaagatgatgaaaataataaggagcccaagtcgtcc
agccagctgatgcaggagtggggtctggaggatgtgcagtatggcttcacagaggaggac
tatacaaccctcaccaactacaaggccttcagccagttcctcaggtactgtacatgtagg
atcatcatttactgcctttcttattacagtgttctttccctgactttcctcaggccactt
attgccaagaagaaccctaagatccccatgtcaaagatgatgacagtgttaggggccaag
tggcgagagttcagcgctaacaaccccttcaaaggcacctctgcaactgctgtggctgct
gccgtggctgctgccgtggaaacggtcaccgttgcctcgcccacctctgtcaaagagatc
actacactgtcaagttctcagcctgggcaaatcagaaaagccaaaaccaaagatggaaag
gggcctggggttcgacggaaaacaaagactgtaaaggaggtaaagaagaaaagtaaaggg
aagaagaccaaatcaaagaagaaagcatcctcgagtgaggaggactttgggctggaggag
tcggactttgatgatgtcagcatccacagtgcctcggtgcgctctgatacctcggggaat
gccaagaagaaagcccggaagggtcggaaaaaaaggaaaagagaggatggggacggctat
gagacagaccaccaggactactgtgaggtgtgccagcagggaggggagatcatcctgtgt
gacacctgtcccaaagcctatcacctggtgtgtctggaccctgagctggagaaagctcct
gagggcaagtggagctgcccccactgtgagaaggagggcatccagtgggaggccaaagat
gatgacgatgaggaagaggaggttgcggttgaggaagaggacgaccacctggagttctgc
agagtgtgtaaagacggaggggagctgctgtgctgtgacacctgcccctcctcctaccat
atccactgcctcaaccctccactgcctgagatacccaatggggagtggctgtgcccacgc
tgcatgtgcccacctccgaaggggaaggtacagaggattctccactggatttggggggat
ccccccttacccatggaggtgccccctggccccaatggagagactgtggacccgctggta
aagccccccctgaagggccacccggagagggagctgtttgtcaagtgggctggtctctcc
tactggcactgctcctgggtcagtgaactgcagttggagctgtaccatgcggtgatgtac
cgtaactaccagcgtaagaacgacatggacgagccccctccgtacgactacggctctggg
gaggaggagctgaacaacgagaagaggaagagtaaagacccgcagtacgctgccatggag
gagagattctaccgctacggcatcaagccagagtggatggtcatccacaggatcctcaac
cacagttatgataaggatggggatgtgcactacctgatcaagtggagagacctgccctat
gaccagtgcacctgggaggtggatgactttgacgtccctgagtatcacaacgccaaacac
tcctattgggaccacagggagcagatgattggtgacgaccagcgccctttagttgtgaga
aagggaaagaagggcaaagaggaggagaagaggagggagagagaaatccctcctaacgct
ccaattatagatcctaccatcaagtttgaacatcaaccctggtacatcaatgccactggg
ggaaccctacacccataccagctggaggggttgaactggttacggttctcctgggcacag
ggcacagacactatcctagcagacgagatgggcctgggcaagactgtccagaccatcgtg
ttcctctactcactctacaaggagggtcactccaaagggccatacctggtcagtgccccc
ctgtccaccatcatcaactgggagagggaatttgagatgtgggccccagacttctacgtg
gtgacctacactggggacaaagaaagccgggcggtcatcagggagaacgagttcaccttc
gaggacagtgcggtcaaaacaggccgcaaggtcttccgtatgaagaaagacacggccatc
aagttccatgtgttgctgacgtcatatgagctaatcaccatcgatcagaccattctgggc
tccattaactgggcctgtctagtggtggatgaggcccacagactgaagaacaaccagtca
aagtttttcagaattctcaatggttataagatctactataagctactactgactggcact
cctctgcagaacaacctggaggagctgtttcacctgctcaacttcctcaccccagagaga
ttcaataacctggatggcttcctggaggagtttgcagacatctccaaggaggaccagatc
aagaagctgcatgatctgttgggcccacacatgctcaggagactgaaggctgacgtcttc
aagaacatgccttccaagacagagctcattgtacgagtggagctcagccccatgcagaag
aagtactacaagtttatcctgacgcggaactttgaggcgctcaactccaagggcgggggc
aaccaggtgtccctgctcaacatcatgatggacctgaagaagtgctgcaaccacccctac
ctgttccccgtggcagccgtggaggcaccagtgttacccaatggctcttatgatgggaac
cagctggtcaagtcctcaggcaaactcaccctgctccagaagatgctaaggaaactcaaa
gatgaaggacacagagttctcatcttctcccagatgactaagatgctggatctgcttgag
gactttctggaatacgagggctacaaatatgaacgcattgatggaggcatcacaggggga
ctacgacaggaggctatcgaccgcttcaacgcaccgggtgctcagcagttctgcttcctg
ctctccacccgagctggaggcttgggcatcaacctggccacggcagacaccgtcatcatc
tacgactcagactggaaccctcacaacgatatccaggcattcagcagggcccaccgtata
ggtcagaataagaaggtgatgatctatcgctttgtgacgcgagctagcgtggaggagcgc
atcacccaggtggccaagaggaagatgatgctgacccacctggtggtgaggcccggcctg
ggctccaagaccggctccatgtccaaacaggagctggacgacatcctcaagttcggcacc
gaggagctcttcaaggacgagatggaggcagccgcacgggccatgggttcccatcaaaaa
ctctgtaagaataatggggacataaaggatggagatgagggcagtgtcattcactatgat
gacaatgccatctccaagctgctggaccgtagccagaatgccacggaggacactgagatc
cagaacatgaacgaatacctcagctccttcaaggtggcccagtacgtggtcaaagacgag
gacgcagaggtgaggacacactcacacactcagtcagcatgggcattgttatgtctagga
gtggctctgttatgtattctcacagtgtgtatgtgtgagtattcagcagtctcttcattg
tattctcattgattaccagaggagccccagcgggagatcattaagcaggaggagaatgtg
gatccagactactgggagaagctgctgaggcaccattatgagcagcaacaggaggatctg
gcccgcaacctgggcaaaggcaaacgcatccgcaagcaggtcaactacaacgacacgtct
caggaggaccaagagtggcaggatgatctttcagacaatcattccgagtactccgtgggg
tccgaggacgaggacgaagatttcgaggagaggccggaaggtgggcgcaggcattctcgc
aggcagctgaagagtgacagggacaaacctctgccacccctgcttgcgcgcgtagggggc
aacatcgaggtgctggggttcaacgcccgtcagcggaaggccttcctcaacgctatcatg
cgctggggcatgcctcctcaggacgccttcaactctcactggctagtcagagacctgaga
gggaagagtgagaaagagttcagggcctacgtgtccctgttcatgagacatctttgtgag
cccggggcagacggggcggagacctttgcagatggggttccacgagaagggctgtcccgc
cagcatgtcctcaccaggattggggttatgtctctggtcaggaaaaaggtccaggagttt
gagcatgtcaatgggaaatacagcactccagacctgatccctattggactggacctgaag
aaactgactgagagtctgtcctctgaccccaacacccccgtccctgctagccctgctgcc
acaccccagcctcctggaagtcctgtcccaccagagaagatggactcgatctcagggcct
gctgaagacaaggagcccacagaacaggaatgcaagaagctaccagaactggaggtcaga
tcatcttcccaggtagagaagacggacatcgctcctgacagtgatgagacagcgaaaggt
agcacagaggacaaaccagtctcctcagaggagagtagtgaaatgacagacataccctcc
gcactgatagagccatccatcaatcctaaagagcctccatccatacatacagagctgtcg
tccaatcaaagctcaccaaaagcggagccctgtcgagagacagagaagtccttagaaaaa
ggagacagtgatcctgccccagccaaacctgaggagaaggaactgaatccagttgtttca
gacgaggccaagagcgaggacttgcttgtgcccgacggacggctgaatggagaaaaagaa
gcacaggaggagatggaggaggtcaggagggaattactggagaagaatggtttcaagatg
aggttcatgttcaacattgccgacggaggcttcacagagctgcacaccctgtggcagaac
gaggagcgggctgccgtgtcatctgggaagatgtatgacatctggcaccgtcgccacgac
tactggctactggctggcatcgtaacgtatcctctgccctagctgttagagcaggctctg
gtgatagaggagcagttgaggagggcagcgtacctgaatatgacccaggaccctagccac
ccggccatggccctgaacactcgctttgctgaggtggagtgtctggcagagtctcaccag
cacctgtccaaggagtctctggctggaaacaagcccgccaacgccgtgctgcacaaagta
ctgaaccagctggaggagctgctgagtgatatgaaggcagatgtgacgcggcttcccaac
atgttgtcccggatccccccagtgtcttcgcgtctgcagatgtctgagaggagcatcctc
agccgcctcaccagccgcggcaacgaacctccgccccaacagccgttcggccagggctca
tttgcctgttcccagatgtacagcactggctttgggggcagtttccgggggcctgcaggt
gaggccatggtcaactatagccagatgcccctgggaccctatgtcagtgtgtccaatggc
cccccacccccatccagccacttggacaagaagtcctgcgaccacctgagggatgtcacc
acccctgaccttaagtcaggcaagcccagtgatgttatctgtattgaagattag
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