Salvelinus namaycush (lake trout): 120066005
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Entry
120066005 CDS
T07522
Name
(RefSeq) leucine-rich repeat-containing protein 4C-like
KO
K07523
netrin-G1 ligand
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
120066005
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
I-set
Ig_3
ig
V-set
LRR_14
Ig_2
LRR_9
LRRNT
DUF7617
Sp38
Ig_6
FlK
DUF4293
Syndecan
Motif
Other DBs
NCBI-GeneID:
120066005
NCBI-ProteinID:
XP_038872970
UniProt:
A0A8U1H997
LinkDB
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Position
Sna21:41742028..41743968
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AA seq
646 aa
AA seq
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MLNKMTSSWQQQTMRGPRWNRVLSDPLFVLLLALQLLAVAGLVRAQTCPSVCSCSNQFSK
VICTRRGLRDVPDGISTNTRYLNLQENLIQVIKVDSFKHLRHLEILQLSKNHIRNIEIGA
FNGLASLNTLELFDNRLTTIPNGAFEYLSKLKELWLRNNPIESIPSYAFNRVPSLRRLDL
GELKRLSYISEGAFEGLSNLRYLNLGMCNLKEIPNLIPLVKLDELEMSGNQLTVIRPGSF
KGLIHLQKLWMMHAQIQTIERNSFDDLQSLVELNLAHNNLTLLPHDLFTPLHHLERVHLH
HNPWNCNCDILWLSWWLKEMVPANTSCCARCSSPASHKGRYIGELDQNYFHCYAPVIVEP
PADLNVTEGMAAELKCRASSLTSVSWITPNGSIMTHGAYKIRISVLNDGTLNFTNVTMQD
TGTYTCMVSNSAGNTTASATLNVSSTENVLSYFTTVTVETIEPVHDEGRTTVGHNVGPTP
SAGSWETVSSTSTTTTTTARTPLSTRVTEKTFTIPVTDLNGGSMTGLDEVMKTTKIIIGC
FVAITLMAAVMLIIFYKMRKQHHQQNHHAPQRTIEIINVDEDCVTGGPAMEGHLTLPPLE
HEHLNHYNTYKTAYNHVSTINSIHSSAHEPLLIRASSKDNVQETQI
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgttgaacaaaatgacctcttcttggcagcagcagacgatgagaggtcctaggtggaac
cgggtcctgtccgaccctttgttcgtgctgctcctggccctccagctcctggcggtggcg
ggtctggtgcgcgcgcagacctgcccatccgtctgctcctgcagcaaccagttcagcaag
gtgatctgcacccggcggggactacgtgatgtcccagacggcatctccaccaacacacga
tatctgaaccttcaggagaacctcatccaggtgatcaaggtggacagcttcaagcatctg
cggcacctggagatcctccagctcagcaagaaccacatccgcaacattgagattggggct
ttcaacggcctggctagtctcaacaccctggagctgttcgacaaccgcctcaccaccatc
cccaacggggcctttgagtacctctccaagctcaaggagctgtggctgaggaacaaccca
atcgagagcattccctcgtatgcgttcaacagggtgccctcgctacggaggctggactta
ggggaactgaaacgcctctcgtatatctcagagggagctttcgagggactcagcaacctg
cgctacctgaacctgggcatgtgcaatctcaaggagattcccaacctcatccctctggtc
aagctggacgagctagagatgtcagggaaccagctgacggtcatcagacccggctccttc
aaagggctgatccacctgcagaagctgtggatgatgcacgcccagatccagaccattgag
aggaactcctttgatgacctgcagtcgcttgtggagctcaacctggcccacaacaacctc
actctgctgccccatgatctcttcacccccctgcaccacctagagagagtccacctccac
cacaacccctggaactgcaactgtgacatcctgtggctcagctggtggctcaaagagatg
gtgccggccaacaccagctgctgcgcccgctgcagttccccagcaagccacaaggggcgc
tacatcggtgagctggaccagaactatttccattgttatgcaccggttatcgtagagcct
ccggctgacctgaacgtgacagagggcatggcagcggagctgaagtgcagggcaagttct
ctgacctcagtcagttggattacacctaacggctccattatgacccacggtgcatacaag
atccgcatttccgtgctaaacgatggcacgctcaacttcaccaacgtcaccatgcaggac
acgggcacctacacctgcatggtgagcaactcagcgggcaataccacagcatctgccacg
ctgaacgtgtcatccacagagaacgtcctgagctactttaccacagtgacagtggagacc
atagagccagtgcatgacgaggggcgcaccacagttgggcataatgtgggccctaccccc
tctgccggctcctgggagaccgtctcatccacatctaccaccaccaccaccacggcccgg
acacccctctccacccgggtcacagagaagacctttaccatccccgtcacagacctgaac
ggcggctcaatgaccggcctggacgaggtgatgaagaccaccaagatcatcatcggatgc
tttgtggccatcaccctcatggccgctgtcatgctcatcatcttctacaagatgagaaag
cagcaccaccagcagaatcaccatgcaccccagcgcaccatcgagatcatcaacgtggac
gaggactgtgtgacgggcgggccggccatggagggccacctgactcttcccccgctcgag
catgagcacctcaaccattacaacacctataagactgcgtacaaccacgtctccaccatc
aactccatacacagctcggcgcacgaacctttgttaatccgggccagctcgaaagacaat
gtacaagagacccagatctaa
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