Salvelinus namaycush (lake trout): 120066056
Help
Entry
120066056 CDS
T07522
Symbol
sin3aa
Name
(RefSeq) SIN3 transcription regulator family member Aa isoform X1
KO
K11644
paired amphipathic helix protein Sin3a
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
120066056 (sin3aa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
snh03036
]
120066056 (sin3aa)
Chromosome and associated proteins [BR:
snh03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
Sin3A-HDAC complex
120066056 (sin3aa)
REST complex
120066056 (sin3aa)
Heterochromatin formation proteins
Other heterochromatin formation proteins
120066056 (sin3aa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sin3a_C
PAH
Sin3_corepress
PAH_ZNF598
HHD_RTEL1
zf_PCFS4
Motif
Other DBs
NCBI-GeneID:
120066056
NCBI-ProteinID:
XP_038873065
UniProt:
A0A8U1FBC9
LinkDB
All DBs
Position
Sna21:9172702..9198438
Genome browser
AA seq
1269 aa
AA seq
DB search
MKRRLEEQEPVFASQQRRLTGSTEAFQHRVLAPAPAVYEAVGDSMQPTAGNIQYSVPQGY
QVPTVPHNSSGHGHTPSPAVHHHSPAVQPHGPPVMQGHAHPPASAQGQQQFQRLKVEDAL
SYLDQVKLQFGNQPQVYNDFLDIMKEFKSQSIDTPGVISRVSQLFKGHPDLIMGFNTFLP
PGYKIEVATNDLVNVTTPGQIHHITPHGISISQIPLSGPPTLHQPQVPAPTTTSAPPPPT
QPTPTKISKQPLQSPVLTPSSQSNPSIPAYASPRSPTLQPHTPISGTPNAPPLQNNQPVE
FNHAINYVNKIKNRFQGQPDIYKAFLEILHTYQKEQRNAKEAGGNYTPALTEQEVYAQVA
RLFKNQEDLLSEFGQFLPDANSSVLLSKTTAEKAESVRNDHGGTAKKLQLNNKQRPNQNG
CQIRMLSGTVATPPVKKKPKLLNLKDSSLVEASKHGDGTESLFFEKVRKALRSAEAYDNF
LRCLVIFNQEVISRTELVQLVLPFLGKFPELFNWFKNFIGYREMSHTERYPKERALEGIA
MEIDYASCKRLGSSYRALPKSYTQPKCTGRTPLCKEVLNDTWVSFPSWSEDSTFVSSKKT
QYEEHIYRCEDERFELDVVLETNLATIRMLETVQRKLSRMSAEEQAKFRLDNTLGGSSEV
IHRKAIQRIYGDKAPDIIDGLKKNPAVSVPIVLKRLKTKEEEWREAQRGFNKIWREQNEK
YYLKSLDHQGINFKQNDTKVLRSKTLLNEIESIYDERQEQASEENTAMPSGPHLTLTYED
SQILDDAAALIIHHVKRQTGIQKEDKYKIKQIIHHLIPDMLFAQRGELSDLEEEEEEEME
LDEAVAKKHNGVTQGGSPNKSSKLLFCNTGAQKLRSCAEAYNLFYVNNNWYIFLRLHQTL
CSRLMRIYGQAERQIEEDIRERDWEREVLGLKRDKNDNPAIQLRLKEPMDVEVEDYYSAF
LEMVRNLLDGNMEPAQYEDSLREMFTIHAYTAFTMDKLIQSIVRQLQHIVSDEICVQVTD
LYLAEGTNGATGGPLPTQTSRASTEGCYQRKAEQIMSDENCFKLMFLKNRGHVQLTVELL
DTEEENSDEPMEAERWSDYVGRYLNSDSTSPELREHLAQKPVFLPRNLRRIRKYQRGREQ
LEKEASEGEKKSMENAENLKMECMFKLNSYKMVYVFKSEDYMYRRTALLRAHQSHERVST
RLHKHFQAWVDFWVKEHVTRDMAAETNKWLMGEGRDGLVPCTTTRELEILHFMNINKYRV
KYGSPFKAP
NT seq
3810 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggcgcttggaggaacaggaaccggtatttgcgtcccaacagcggcgcctcacc
ggcagcacggaggctttccagcaccgcgtcctggccccggcgcctgccgtgtacgaggcc
gtgggcgacagcatgcagcctaccgcaggcaacattcagtattctgtcccacagggctac
caggtccccactgtgccacataactcgagtggtcatgggcacacccctagcccagctgta
caccaccacagcccagcggtccagccccacgggccccctgtgatgcagggccacgctcac
ccccctgcctcagcccagggccagcagcaattccagaggctcaaggtggaagatgctttg
tcttacctggaccaagtgaaactccagtttggcaaccaacctcaagtctacaatgacttc
ctggacatcatgaaggagtttaagtctcaaagcattgacactccaggggtgataagcagg
gtatcccagctcttcaaaggccaccccgacctcattatgggattcaacaccttcctgcca
ccgggctacaagatcgaggtcgcgaccaacgacctggtcaatgtgaccacgccgggtcag
atccaccacatcacccctcacggcatctctatctcacaaatccccctgtcgggaccaccc
accctgcaccagccccaggtgccagcccccaccaccacctctgccccaccccctcccacg
cagccaacccctaccaagataagcaagcagccactgcaatctccagtcctcacgccaagc
agccagtccaatccgtccatccccgcctatgcctccccccgatccccaaccctgcagccc
cacaccccgatcagtggcacgcccaatgcccctccgctgcagaacaaccagcctgtggag
ttcaatcatgccatcaactacgtcaacaagatcaagaaccgtttccagggtcagccggac
atctacaaagccttcctggagatcctgcacacctaccagaaggagcagcggaatgctaag
gaggcaggagggaactacaccccagccctgacagagcaggaggtctatgcccaggtggcc
cggctcttcaagaaccaggaggaccttctctccgagtttggccagttcctaccagatgcc
aacagctcggtgctgttaagcaagacgacagcggaaaaggcggagtctgtgcggaatgac
cacggtggcacagcgaagaagctgcagctcaacaacaaacagaggcccaatcagaacggt
tgccagatccgcatgctctctgggacggttgccacaccccctgtcaagaagaagcccaag
ttactgaatttaaaagactcgtccctggtagaagccagcaaacatggagatggcacagaa
tctctgttctttgagaaggtgcggaaggccttgcggagtgcagaggcctatgacaacttc
ctgcgttgtttggtcatcttcaaccaagaggtcatctccagaactgagctggtacaactg
gtgctgcctttcctggggaaattccccgaactgttcaattggttcaagaacttcatagga
taccgggaaatgtcccacactgagcgctatcccaaggagcgtgccttggagggcattgcc
atggagatcgactatgcttcctgcaagagactaggctcgagctacagagcactgccgaag
agctacacgcagcccaagtgcaccgggagaacgccactgtgcaaagaggtcctcaatgac
acctgggtgtccttcccttcctggtctgaagactccacctttgtgagctccaaaaagacc
cagtatgaggagcacatctacagatgtgaggatgaacgcttcgagctggacgtggtgctg
gagacgaacctggccaccatccgcatgctggagaccgtacaaagaaaactgtcccgtatg
tctgccgaggagcaggccaagttccgcctggacaacacgctgggaggctcctcggaagtc
atccatcgcaaggccatccagaggatatacggtgacaaggcccctgacatcatcgatggg
ctcaagaagaaccctgctgtgtctgttcccattgtgctgaagaggttaaagaccaaggag
gaggagtggcgggaagcccagaggggcttcaacaagatctggagggagcagaatgagaag
tactacttgaagtctctcgaccaccaaggtatcaacttcaaacagaacgacaccaaggtg
ctacgatccaagacactgctcaatgagattgagagcatctacgacgagcgacaggaacag
gcgtcggaagagaacaccgcaatgcccagcggcccccacctgactttgacctacgaggac
agccagatcctggatgacgctgccgccctcatcatccaccacgtcaagcggcagacgggc
atccagaaggaggacaagtacaagatcaaacaaatcattcaccacttgatccccgacatg
ctgttcgcacagcgcggcgagctctcggacctggaggaagaagaggaagaggagatggag
ctggatgaggccgtggccaagaagcacaatggcgtcacgcaaggcggaagccccaacaag
tcctccaagctcctcttctgcaacacgggtgcccagaagctgcgaagttgcgccgaggcc
tacaatctattttacgtcaacaataactggtacatcttcctgcggctgcaccagacactg
tgctcgcggctgatgcggatctacgggcaggcggagaggcagattgaggaggacatccgg
gagcgtgactgggagagagaagtgctgggcctcaagcgagacaagaatgacaaccctgcc
atccagctgagactgaaagagcccatggatgtagaggtggaggactactactctgccttc
ctggagatggtgcggaaccttctggatggcaacatggagccggctcagtacgaggactcc
ctccgggagatgttcaccatccatgcctacaccgccttcaccatggacaaactcatccag
agcattgtcaggcagctccagcacatagtgagtgatgagatctgcgtgcaggtgacagac
ctgtacttagcagagggcaccaacggggccaccggaggtccccttcccacccagacatcc
agagcttccacagagggatgctaccagcgaaaggcggaacagatcatgtccgatgagaat
tgcttcaagcttatgtttctaaagaacagaggccatgttcaactgacagtggagcttctg
gacaccgaggaggagaactccgatgaacccatggaggcagagcgctggtcagattacgtg
ggtcgctacctgaattctgactctacctctccagagttgcgggaacaccttgctcagaaa
cctgtcttccttcccaggaacctccgtcggatacgtaagtaccaaaggggtagggagcag
ctagagaaggaggccagcgagggagagaaaaagtccatggagaatgctgagaaccttaaa
atggaatgtatgttcaagctcaactcctacaagatggtgtatgtcttcaagtctgaggac
tacatgtaccgacgcactgccttgctgcgagctcaccagtcacacgagagagtgagcact
cggttgcacaagcacttccaggcctgggtcgacttctgggtgaaggagcatgtcactcgc
gatatggccgctgagaccaacaagtggctgatgggagaggggcgtgacggcctggtgccg
tgcaccaccacccgcgagctggagatcctccacttcatgaacatcaacaagtaccgtgtc
aaatacggctcacccttcaaagcaccataa
DBGET
integrated database retrieval system
