Salvelinus namaycush (lake trout): 120066230
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Entry
120066230 CDS
T07522
Symbol
sf3b3
Name
(RefSeq) splicing factor 3B subunit 3
KO
K12830
splicing factor 3B subunit 3
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120066230 (sf3b3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
snh03021
]
120066230 (sf3b3)
03041 Spliceosome [BR:
snh03041
]
120066230 (sf3b3)
03036 Chromosome and associated proteins [BR:
snh03036
]
120066230 (sf3b3)
Transcription machinery [BR:
snh03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
120066230 (sf3b3)
Spliceosome [BR:
snh03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
120066230 (sf3b3)
Complex B
120066230 (sf3b3)
Complex C
U2 SnRNP specific factors
120066230 (sf3b3)
Chromosome and associated proteins [BR:
snh03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
120066230 (sf3b3)
TFTC complex
120066230 (sf3b3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
Beta-prop_EML
Motif
Other DBs
NCBI-GeneID:
120066230
NCBI-ProteinID:
XP_038873375
UniProt:
A0A8U1H9P6
LinkDB
All DBs
Position
21:complement(25087933..25128284)
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AA seq
1217 aa
AA seq
DB search
MFLYNLTLQRATGITHAIHGNFSGTKMQEIVVSRGKIIELLRPDANTGKVHTLLTMEVFG
IIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYHPSKNMFEKIHQETFGKSGCRRIVPGQF
LAVDPKGRAVMIGAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP
MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEALEEHGNFLITVPG
GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKVTLETDEEMVTEIRMKYFDTIPVATSMCVLKTGFLFVSSEFGNHYLYQ
IAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDEQENLSPIMSCQIADLANEDT
PQLYVACGRGPKSTLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGEDALVQVYPDGIRHIRADKRVNEWKTPG
KKTIVRCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQ
RSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGVEKEDELGVKGTV
GFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSW
LSYSYQSRFHLTPLSYETLEYASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFP
LQYTPRKFVIHPETNNLILIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAEMAA
AFLNENLPEAIFGAPKAGSGQWASLVRLVNPIQGTTLDLVQLEQNEAAFSVTVCRFASGG
DDWYVLVGVARDMILNPRSVGGGFIYTYRLGGGGDKLEFMHKTPVEDVPLAIAPFQGRVL
VGVGKLLRIYDLGKKKLLRKCENKHVPNLVTGIHTIGQRVIVTDVQESLFWVRYKRNENQ
LIIFADDTHPRWVTTACLLDYDTMASADKFGNISIVRLPPNTSDDVDEDPTGNKALWDRG
LLNGASQKAEVIMNYHIGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDF
FQHLEMHMRSEFPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMDPHKQKSVAEELDRT
PPEVSKKLEDIRTRYAF
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgtttctgtataacctgaccctgcagcgtgccactggcatcacccacgccatccatgga
aacttctcaggaaccaagatgcaggagatagttgtttccagggggaagatcattgagctg
ctgcgcccagatgccaacacagggaaggttcacaccctgcttaccatggaggtgtttggc
atcattcgctccctcatggccttcaggctgacaggaggaactaaagactatattgtggtg
ggcagtgactcaggccgcatcgtgatccttgagtaccacccctccaagaacatgttcgag
aagatccaccaggagacctttggcaagagtggatgtcgtcgcatcgtccctggacagttc
ctcgccgtcgaccccaagggcagagcagtcatgataggtgccattgagaagcagaagctg
gtgtacatcctgaacagagatgcagcagcgcgtctcaccatctcctctcccctggaggct
cacaaggccaacacactggtctaccatgtggtaggagttgatgtgggctttgaaaacccc
atgttcgcctgtctggagatggactatgaggaagctgacaatgaccccactggcgaggct
gcagccaacacacagcaaaccctgaccttctatgagctggacctgggtctgaaccacgtt
gtgcgcaagtacagcgaggccctggaggagcacggcaacttcctcattacagttcctgga
ggctctgatgggcccagtggagtactcatctgttcagagaattacatcacctacaaaaac
tttggggaccagcctgacattcgctgtcccatcccacgcaggaggaatgacctggatgac
cctgagcgaggcatgatcttcgtctgctcagccacccacaagaccaagtccatgttcttc
ttcctggcccagacggagcagggcgacattttcaaggtcaccctggagacagatgaggag
atggttacagagatcaggatgaagtactttgacaccatacctgtagccacatccatgtgc
gtgctgaagaccggcttcttatttgtgtcctcagagtttggtaaccattacctgtaccag
atagcccatctgggagatgacgatgaagagccagagttctcctctgccatgcccctggag
gagggagataccttcttcttccagccacgccccctcaagaacctagtgctggtggatgag
caggagaacctctcccccatcatgtcctgccagattgctgatctggctaatgaggacact
cctcagctgtatgtggcctgtggcaggggacccaaatccaccctccgagtcctcagacat
gggctggaggtatcagagatggctgtgtctgagctgcccggtaaccccaatgctgtgtgg
actgtgcgccgacacattgaagatgagtttgacgcgtacatcatcgtttccttcgtcaac
gccaccctggttctgtctatcggtgagaccgtagaggaagtgacagactctggcttcctg
gggaccacccccaccctctcctgctctctgctgggggaggatgctctggtgcaggtgtat
cctgatgggatccgtcacatccgtgctgataagcgtgtgaatgagtggaagactccaggg
aagaagaccattgtgcgctgtgcagtcaaccagaggcaggtggtcatcgctctgaccgga
ggagagctggtctactttgagatggacccttctggccagctgaatgagtacacagagagg
aaggagatgtcagctgacgtggtgtgtatgagcttggccaatgtcccccctggtgagcag
cgctcccgtttcctggcggtggggctggtggacaacaccgtccgcatcatctccctggac
ccctcggactgtctccagcccctcagtatgcaggccctgccagcccagcctgagtctctg
tgtatagtggagatgggaggagtggagaaggaagatgagctaggagtgaagggcactgtc
ggctttctctacctcaacatcggactgcagaatggtgtgttgctcaggaccgtgctggac
ccagtgactggagacctgtctgatactcgtactcggtacttggggtcgcgacctgtgaag
ctcttccgcgtcaggatgcagggacaggaagctgtgttggccatgtctagtcgctcctgg
ctgagttattcctaccagtcccgattccatctgacgcccctgtcctatgagacgctggaa
tatgcctctggctttgcctctgaacagtgtccagagggcattgtggcaatctccaccaac
accctgaggattctggccttggagaagctgggtgccgtgttcaaccaggtggccttcccc
ctgcagtacacacctcgcaagtttgtcattcacccagagacaaacaacctgatactcata
gagactgatcacaatgcctacacagaggccaccaaggcccagcgcaagcagcagatggca
gaggagatggttgaggcagctggtgaggatgagagggagctggcagcagagatggctgct
gccttcctcaatgagaacctgccagaggccatctttggggcgcccaaggccgggtctggc
cagtgggcctctctggtgcgtctggtcaaccccatccagggaaccactctggaccttgtc
caactggagcagaatgaggctgccttcagtgtgactgtttgtcggtttgccagcggaggt
gatgactggtatgtgctggtgggggtggcccgggacatgatccttaacccccgctctgtg
ggaggcggttttatctacacctatcggctgggagggggaggggacaaactggagtttatg
cacaagactccagtggaggacgttcctctggccatcgctccgttccagggccgtgtgctg
gtgggcgttggcaaactgctgcgcatctacgacctgggcaagaagaagctgctccggaag
tgtgagaacaagcatgtgcccaacctggtgactggtatccacaccatcggtcagcgggtc
atagtgactgatgtacaggagagtctgttctgggtgcgctacaagcgcaacgagaatcag
ctgatcatcttcgctgacgacacccaccctcgctgggtcaccaccgcctgcctgctggac
tacgacaccatggcttcagccgacaagtttggcaacatcagcattgtgcgccttccccct
aacaccagtgacgatgtggatgaggacccaactgggaataaagcattgtgggatagaggt
ctgctgaacggagcttctcagaaggctgaagtgatcatgaactaccacattggggagacg
gtgctgtcactgcagaagaccacactgatccccggcggctcagagtctctggtctacaca
actctgtctggaggcatcggcatcctggtgcccttcacttcccacgaggatcatgacttc
ttccagcacttagagatgcatatgcgctcagagttcccccctctgtgtggcagggaccac
ctcagcttccgctcctactacttccctgtaaagaatgtgatagatggagatctgtgtgag
cagttcaactccatggacccccacaagcagaagagtgttgctgaggagctggaccgtacc
ccccctgaggtctcaaagaaactggaggacatccgcacacgctatgccttctag
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integrated database retrieval system
