Salvelinus namaycush (lake trout): 120066335
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Entry
120066335 CDS
T07522
Symbol
top3b
Name
(RefSeq) DNA topoisomerase 3-beta-1
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03440
Homologous recombination
snh03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
120066335 (top3b)
03460 Fanconi anemia pathway
120066335 (top3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
snh03032
]
120066335 (top3b)
03400 DNA repair and recombination proteins [BR:
snh03400
]
120066335 (top3b)
Enzymes [BR:
snh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
120066335 (top3b)
DNA replication proteins [BR:
snh03032
]
Eukaryotic type
DNA Topoisomerases
120066335 (top3b)
DNA repair and recombination proteins [BR:
snh03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
120066335 (top3b)
FA (Fanconi anemia) pathway
120066335 (top3b)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_TOP3B
Toprim
Fer4_11
Motif
Other DBs
NCBI-GeneID:
120066335
NCBI-ProteinID:
XP_038873956
UniProt:
A0A8U1FCC0
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Position
Sna1:complement(3930257..3969165)
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AA seq
857 aa
AA seq
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MKTVLMVAEKPSLAQSIAKILSKGSCSSRKGLNGACSVHEYMGTFSGQSVRFKMTSVCGH
VMSLDFIGKYNNWDKVDPAELFTKAPTEKKEANPKLNMVKFLQVEGKGCDYVVLWLDCDK
EGENICFEVLDAIEPVMNRPYGSERTVYRAKFSSITDTDIWAAMNKLGEPNRNEALSVDA
RQELDLRIGCAFTRFQTKYFQGKYGNLDSSLISFGPCQTPTLGFCVERHDKIQSFKPETY
WVIQAKVFKGKESPLTLDWDRVRVFDREVGQMFVNMTKTSREAKVESVSKKEKAKQRPLA
LNTVEMLRVASSSLGMGPQHTMQIAERLYTQGYISYPRTETNHYHDNFDLKGTLRQQANN
PFWAQEVKALLSEGLNRPRKGSDAGDHPPITPMRAASEGELGSDGWRLYEYIVRHFIATV
SQDCKYLQTTISFTIASEGFSCSGKTLISPGFTEVMPWLGIPLEEAMPVCERGDVFTVEE
IKLVERQTSPPDYLTEADLITLMEKHGIGTDASIPVHINNISQRNYVTVENGRKLKPTNL
GIVLVHGYYKTDAELVLPTIRGAVEKQLNLIAQGKANYQQVLQHTLDIFKRKFHYFFDTI
ASMDELMEVTFSPIAATGKPLSRCGKCHRFMKYIQAKPSRLHCAGCDETYSLPQNGAIKL
YKELRCPLDEFELVLWTSGSRGKSYPLCPYCFSNPPFRDMKKGMGCNECTHPSCQHSLNS
LGIGQCVECEGGVLVLDPTSGPKWKMACNRCNVMVHFFEHAHRVQVAQESCEACEASLVA
VDFNKTRSPLPDGETQHSGCVFCDPVFQDLVELKHATMRHPSMTRGGGARRGGRGRGRGR
REKKPKDKMAALAAYFV
NT seq
2574 nt
NT seq
+upstream
nt +downstream
nt
atgaagacagttttgatggtagcggagaagccgtcgttggctcagtcaattgccaaaatc
ctatctaaaggcagctgctccagtcgtaaaggtctcaacggagcatgttcggtccacgag
tacatgggcaccttctcaggccagagcgtgcgctttaagatgacgtcggtgtgtgggcac
gtgatgagtctggatttcatagggaagtataataactgggacaaggtggatccagctgaa
ctcttcactaaagcccctaccgagaagaaggaagccaaccccaaactcaacatggtcaag
ttccttcaggttgaaggcaaaggatgtgactatgtggttctgtggttggactgcgacaaa
gagggagagaacatctgctttgaggtcctggacgccattgagccggtgatgaaccgtccg
tatggcagtgaacggaccgtctaccgagccaagttcagctccatcaccgacacggacatc
tgggcggccatgaacaagctgggagagcccaaccgtaacgaggctctgtccgtagacgcc
cggcaggagctggacctgcgcattggctgtgcattcacccggttccagaccaagtacttc
cagggtaaatatggtaacctggactcatccctgatctcctttgggccatgtcagacccct
acactgggcttctgtgtggagcgccacgacaagatccagtccttcaaaccagagacctac
tgggtcatacaggctaaggttttcaaagggaaagagtctcctctgactctggactgggac
agggtgagagtcttcgacagagaggtgggacagatgtttgtcaacatgactaagacctcc
agggaggccaaggtggagtcggtgagtaagaaggagaaggccaagcagagacctctggcc
ttgaacactgtggagatgctccgagtggccagctcctctctaggtatgggtccacagcac
accatgcagatagcagagcgtctgtacacccagggttatatcagctacccccgtactgag
accaaccactaccacgacaactttgacctgaaagggacactcagacagcaggctaacaac
cccttctgggctcaggaggtgaaggctcttctgtcagagggactgaaccgtcccaggaaa
ggatctgatgctggagatcaccctcccatcacccccatgagggctgcctccgaaggagaa
ctaggaagtgacgggtggcgtctgtatgagtacatcgtgcgccacttcatcgccacggtg
agtcaggactgtaagtacctgcagacgaccatctcgttcaccatcgcctccgagggtttc
tcctgcagtgggaagacactcatatcacctggctttacggaggtgatgccgtggctgggt
atccctctagaggaggccatgccagtgtgtgagaggggagatgtcttcacagtggaggag
attaaactagtggagagacagaccagccctccagactaccttactgaggccgacctcatc
acactgatggagaaacacggcataggtactgatgccagcatcccggttcatatcaacaac
atctctcagaggaattatgtgacggtggagaacggacgcaagctcaaacccaccaacctg
ggcattgttctggtgcacggatattacaagacagatgctgagctggtgctgcctaccatc
cgtggtgcagtagagaaacagctgaacctgattgctcagggcaaggccaactaccaacag
gttctgcaacacacgctggacatcttcaagaggaagttccactacttctttgacaccatc
gctagtatggacgagctcatggaggtgacgttctctcccatcgctgccaccggcaagccc
ctgtctcgctgtggcaagtgccatcgcttcatgaagtacattcaggccaagcccagccgg
ctgcactgtgctgggtgtgatgagacgtacagcctgcctcagaacggcgccatcaagctg
tacaaggagctgcgctgcccgctggatgagtttgagctggtgctgtggacctctggatcc
aggggaaagagctaccccctttgtccctactgcttcagcaacccccccttcagggacatg
aagaaaggtatgggatgtaatgagtgcacccacccgtcctgccagcacagtctcaactcc
ctgggtattggtcagtgtgtggagtgtgagggtggggtgctggttttggaccctacctct
ggccccaagtggaagatggcctgcaacaggtgcaacgtgatggtgcacttctttgaacac
gcacacagggtgcaggtagcccaggagagctgtgaggcatgtgaagcgtccctggtagcg
gtggacttcaacaagacgcgctcccctctcccagacggagagacgcagcacagcggctgt
gtgttctgcgacccagtcttccaggacctggttgaactcaaacacgccaccatgagacac
ccctccatgacccgcggcgggggtgcacggcgaggggggcggggcaggggcagagggcgc
agggaaaagaaacctaaagacaagatggctgccttggcagcgtactttgtgtag
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