Salvelinus namaycush (lake trout): 120066443
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Entry
120066443 CDS
T07522
Symbol
ighmbp2
Name
(RefSeq) DNA-binding protein SMUBP-2
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
snh03009
]
120066443 (ighmbp2)
03012 Translation factors [BR:
snh03012
]
120066443 (ighmbp2)
Enzymes [BR:
snh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
120066443 (ighmbp2)
5.6.2.5 RNA 5'-3' helicase
120066443 (ighmbp2)
Ribosome biogenesis [BR:
snh03009
]
Eukaryotic type
Other ribosome biogenesis factors
120066443 (ighmbp2)
Translation factors [BR:
snh03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
120066443 (ighmbp2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_19
AAA_30
zf-AN1
Viral_helicase1
UvrD-helicase
DEAD
nSTAND3
Helicase_RecD
AAA_22
AAA_16
ResIII
PIF1
SLFN-g3_helicase
ABC_tran
IstB_IS21
AAA_18
AAA_25
SRP54
HEM4
AAA_31
T2SSE
DnaB_C
AAA
PhoH
NPHP3_N
UvrD_C_2
ATPase_2
ATPase
Herpes_ori_bp
Flavi_DEAD
NTPase_1
MeaB
DDHD
AAA_33
Motif
Other DBs
NCBI-GeneID:
120066443
NCBI-ProteinID:
XP_038873736
UniProt:
A0A8U1H995
LinkDB
All DBs
Position
Sna21:49030729..49051713
Genome browser
AA seq
1036 aa
AA seq
DB search
MEVECFVSKTLELLQEEREAEIEETRLWQENVSLKDLQSKGVCLLKLQIGSQSTGLYGRS
LLLLEPRKHMGVSVLPSNNFGPGDIVGLYDLDGCTPSSQLCTGVVTRISQSAVTVACEDS
PDGLNLDTDALYNLMKLANDVTYKRMKKALNTLNGYSSGPASDLISVLFGYSEPGSISQP
HDLCFLNTGLDESQRQAVSFALSQREVAVIHGPPGTGKTTTVVEIILQVVKRGQKVLCCA
GSNVAVDNLVERLAKAKAKVLRLGHPARLLESIQKHSLDAVLAHSDNTNIIADIRKDIDK
AFMGMKKMKDKRDRIHLKREVGELRKELRTREATAIAEVLKRADVVLATNTGANDGGPLK
NLPVDHFDWVVIDECAQALESSCWIALLRGRKCILAGDYKQLPPTIKSHTAASKGLSVSL
MERLIQKYGDSVVRMLTVQYRMNSNIMTWASEQMYQGQLTAHSSVEKHLLKDLPGVASVE
ETSTPLLLIDTAGCGLSEMEVTDEQSKGNQGEVDIVELHIKALTEAGVKPKDIAVIAPYN
LQVHLLRQRLSARHPDLEIKSVDGFQGREKEAVVLTLVRSNRKGEIGFLAEDRRINVAVT
RARRHLALVCDTQTVQTHGFLKTLIDHMTQHGDVRTAFEYLRDIVPQNYTRDHRDTKSSN
TTASSSSSTSNKQKGRGQAGSKVEPGHKKTSGGNKTQGGQPQTDPGTHSQARRSTPTEEE
QRLTQIKYLEIKGQVEWFLQDPDQTELRFPSTLNSHDRLLVHQVAEELGLNHESQGEGKD
RCITVSRPPTGPNEAGEEEEQQALQPAAVLEEDRVTGPPVGQPAAVLEEDRVTGPPVGHP
AAVLEEDSVTGPPVGQPAAPVDLKTLHLERMRREQERREQKKHLETVRTAGQTQTAKKAK
AKGKTKKTKAGACEIAAAATADDDFDTLIDAVVKAERVCSFVKCKTLVIYLGQLCLFCNR
QYCLGHHIPEVHGCGDQARANARMRISKEGVLYAGSGHKNKSVDPNKKAYLHRKLDSKLK
DMEKQRKTKPKENDNN
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atggaggtggaatgctttgtgtccaagaccctagagctccttcaggaggagagagaagca
gagatcgaggagacaaggctatggcaggagaatgtctctctgaaagatctccagagtaaa
ggtgtttgtcttctgaagctgcagataggaagccagtcaactggcctttatggaagatca
ctccttcttctagaacccagaaaacacatgggcgtctctgtgctacctagcaacaacttt
ggacccggagacatagtgggtctgtatgacctggatggctgtacgccgtcctcccagctg
tgtactggtgtagtgacccgcatcagtcagtcagcggtaaccgtggcctgtgaggactcg
ccggacggactcaacctggacacagacgctctgtacaacctcatgaagctggctaacgat
gtcacatacaaacgcatgaaaaaggccttgaacactctgaatgggtacagcagtggacca
gcctcggatttgatcagcgttctcttcggctactcagaacctggctctatatcacaacca
catgatctgtgtttcctgaacactggtctggatgagtctcagagacaggcggtgtcgttt
gcgctgtctcagagagaggtagctgtaatacacgggccaccaggcactggcaagacaacc
actgtggtggaaatcatcctgcaagtggtcaaacggggacagaaggtcctgtgctgtgct
ggttctaacgtggccgtggataacctggtagagcgcctggctaaggccaaagctaaggtc
ctgagactgggtcaccctgcccgcctgctagagtccattcagaaacactcgctagacgcc
gtcctcgctcacagtgacaacaccaacatcatcgctgacatacgcaaagatatcgacaaa
gcttttatggggatgaagaagatgaaggacaaacgagatcggatccacctgaagagggag
gtaggagagctgaggaaagagctgaggaccagggaagctacagccattgctgaggtcctc
aaacgcgctgatgtggttctagctactaacacaggtgctaatgatggtggccctctgaag
aacctacctgtagaccattttgactgggtggtgatcgatgagtgtgcccaggcgttggag
agctcatgctggatcgctctgctccgaggcaggaagtgtatcctggctggagactacaag
cagctgccacccaccatcaagtctcacacggctgcgtctaaaggcctgtctgtcagcctg
atggagaggttgatccagaagtatggagactccgtagtcaggatgctgacagtgcagtac
cgcatgaacagtaacatcatgacctgggcctcagaacagatgtaccaggggcaactcacc
gcacacagctcagtggagaaacacctgctcaaagatctcccaggagtagccagtgttgaa
gagaccagcacccctctcctcctcatagacacagcaggctgtgggcttagtgagatggag
gtgacagacgaacagtccaaaggaaaccaaggtgaggtggacattgtggaactgcacatc
aaagcgttgactgaagctggggtgaaacctaaagacatcgctgttattgccccttacaat
ctgcaggtgcatctcctgcgtcagcgtctctcagccagacatcccgatctggagatcaag
tctgtcgacggcttccagggcagagagaaggaggctgtggtgctgaccttggtcagatct
aacaggaaaggtgagatagggttcttagctgaagaccggaggatcaacgtggctgtgact
cgagccagacgtcacctggccctggtgtgtgacacacagaccgtccagacccacggcttc
ctcaagaccctcatcgatcacatgacccagcacggagacgtacgcaccgcctttgagtac
ctgcgggacattgtgccccagaactacaccagagaccaccgagataccaagtccagcaac
actaccgctagcagctcctcatccacctccaacaagcagaagggcagaggtcaggctggg
agcaaggtggagccaggacacaagaagacctctggggggaacaagacccagggaggacag
ccccagacagatcccggcacacacagccaagccagacgttccacccccacggaggaggag
cagagactgacccagataaaatacctggaaatcaagggccaggtggagtggttcctacag
gacccagaccagacggagctacggtttccctcgaccctcaactcccacgaccgcctgctc
gtacaccaggttgcagaggagctgggcctgaaccatgagagccagggagagggaaaggac
agatgcatcactgtctccagacccccgacagggcctaacgaggctggggaagaagaggag
caacaagccctacaaccagcagccgtcctggaggaagacagggttacagggcctcctgta
gggcaaccggcagccgtcctggaggaagacagggttacagggcctcctgtagggcacccg
gcagccgtcctggaggaagacagtgttacagggcctcctgtagggcaaccggcagcacct
gtagatctcaagactttacatctggaacgaatgagacgggagcaggagaggagggagcag
aagaagcatctagagaccgtccgtacagcaggacagactcagactgctaagaaggccaag
gcaaaaggaaagaccaaaaagaccaaagcgggtgcctgtgagatcgctgcggctgcgacg
gcggacgatgattttgacacccttatagatgccgtggtgaaggcagaacgtgtctgtagt
tttgtcaagtgtaaaacgttagtcatttatctgggacaactctgtctgttctgcaacaga
caatactgcctcggtcaccacatacctgaggtccatgggtgtggagaccaagccagggcc
aatgccaggatgaggatcagtaaagaaggggttctgtatgccggtagtggacacaagaac
aagtctgtagatccgaacaagaaggcctatctacacaggaagctggactccaaactcaaa
gacatggaaaagcagcggaagaccaaacccaaagagaatgacaataattga
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integrated database retrieval system
