Salvelinus namaycush (lake trout): 120066600
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Entry
120066600 CDS
T07522
Name
(RefSeq) transcription factor Sox-19a-like
KO
K16796
transcription factor SOX2 (SOX group B)
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
snh03000
]
120066600
Transcription factors [BR:
snh03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
120066600
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
HMG_WDHD1
SOXp
HTH_24
Motif
Other DBs
NCBI-GeneID:
120066600
NCBI-ProteinID:
XP_038873950
UniProt:
A0A8U1FCD6
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All DBs
Position
Sna21:7483586..7484807
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AA seq
308 aa
AA seq
DB search
MYNIMEHQLKSSGPSHHLGTGMPPANGGGGHGGGHTGSKPPAIQPDPMDKVKRPMNAFMV
WSRGERRKMAQENPKMHNSEISKRLGVAWKSLTDAEKRPFIDEAKRLRAVHMKDYPDYKY
KPRRKTKLMPKNNTLAAQYQMSAGNHLLSASTAQGQGGNPRIDSYGWGHTGGYTAAMQSE
ALGYSQQLHRYDLSALQYQSSVAQAQAYMNGANAYSPMSYSSSTQQVSPVMSMVKQQSDG
HSMSPSPTGTHNHHQAQRGLQVQGDHLRDMISMYMPGGDASDAQRGYSASAANIQQHYLG
GSAPLTHL
NT seq
927 nt
NT seq
+upstream
nt +downstream
nt
atgtataacattatggagcaccaactcaagtcctctggtccctcgcatcatcttggaaca
gggatgccacctgcgaatggaggaggggggcacgggggcggccacacaggatccaaacca
ccggcaatccaacctgacccgatggacaaagtcaagcggcccatgaatgccttcatggta
tggtctcgcggcgagcgacggaaaatggctcaggagaatcccaaaatgcacaattctgag
atatccaaaagactgggtgtcgcgtggaaatctctgacagacgcagagaaaaggcccttc
attgacgaggccaagcgcctccgcgcggtgcacatgaaggattatccagactataaatac
aaaccccgtcgtaaaaccaaactaatgccgaagaacaatactctagccgcgcagtatcag
atgtcggctggtaaccacctgctgagtgcgtccacggctcagggacaaggtggaaacccc
agaatcgacagttatggctggggccacaccgggggctacacggcggcgatgcagagcgag
gccctcggctacagccagcaacttcaccgctatgacctgtcagcacttcagtatcagtcc
agcgtggcccaggcccaggcctacatgaatggtgccaacgcatacagccccatgtcctac
agcagcagcacccagcaggtcagcccagtgatgtctatggtgaagcagcagtctgatggc
cacagcatgtccccctcccctacggggacccacaaccaccaccaggcccagcgtggtctc
caggtccagggggaccatctcagagacatgatcagcatgtacatgcctgggggggatgcc
tcagatgctcagagggggtactctgcatccgcagctaacatccagcagcattacctggga
gggtcagctccactcacccacctttga
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integrated database retrieval system
