Salvelinus namaycush (lake trout): 120066661
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Entry
120066661 CDS
T07522
Name
(RefSeq) LOW QUALITY PROTEIN: U3 small nucleolar RNA-associated protein 4 homolog
KO
K14548
U3 small nucleolar RNA-associated protein 4
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
120066661
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
snh03009
]
120066661
Ribosome biogenesis [BR:
snh03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
120066661
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
WD40
Beta-prop_WDR5
Beta-prop_WDR36-Utp21_2nd
WD40_Prp19
Beta-prop_RIG_2nd
ANAPC4_WD40
Beta-prop_WDR3_2nd
Beta-prop_Aladin
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_NUP159_NUP214
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_HPS5
Beta-prop_TEP1_2nd
Beta-prop_SCAP
RMC1_N
WD40_Gbeta
Beta-prop_WDR75_1st
Beta-prop_IFT140_1st
DUF7165
PROPPIN
Beta-prop_DCAF12
Lactonase
CPSF_A
Kelch_KLHDC2_KLHL20_DRC7
Motif
Other DBs
NCBI-GeneID:
120066661
NCBI-ProteinID:
XP_038874023
UniProt:
A0A8U1H845
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Position
21:23214131..23222002
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AA seq
686 aa
AA seq
DB search
MGEFKVHRVRFFDYMPTAIRAMAFNAHTERLALARMDGSVEIFNFTDHYFQEKVIPGKDS
RSIESLCWVGGRLFSAGLNGEIAEYDLENLRPKYSLEAYGGPIWTIISNTQGTQLAIGCE
DGTVKLFEVLEEHIQFERNLDRQKGRIISLSWHPSGTHIAAGMMDMIRVFDVPTGHAVQR
LLVDRGFGGSKSRETVVWSVAFLSDHTVVSGDSAGKVQVWDGHTGTLVKTHLVTKWDVLA
LSVSKDESSVVAGTSEGTVIQFQFIAPTLHQQQDKEWVRTRTFKNHTHDVRALAEIETAI
VSGGMDTHLVVRPLLEKFDXKSHASGLRKIHFPHRNLVSCAKKAGLLLLQFPGQLELWRL
GDSDGHGKTGDRLPLKRKPEKLLLLKRKGEDHICCSALSSCGGWLAYSTVSCVRIYRLQT
DNNNISITKVSKLPKVLRSAHQLCFSSDSSKMFAASSQSSVLVIALTQSECKYVHTLKPK
SGSRQPIHLMTTSVDGKWLAAANSDCEIHVYNLQKLKLHCIVPVYGSCPSAMGIHPTTNN
LTMVHADQQLFEYSIVEKQYTDWSRKLQKQGLHNVWLDRDTPVTHVTFNPKNPNQVVLHD
MHMFCIIDQSLPLPDQKTQFYNQMTLRSISEQERPSHLHAFKICKTFQDLLCVSLLDDQS
LVVVERPLLAITSQLPAPVRQKKFAT
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgggggagttcaaagtgcaccgggttcggtttttcgactacatgcccacagcgatcaga
gccatggcattcaatgcccacacagagagactagcccttgcacgaatggatgggagtgtc
gagattttcaacttcactgaccactatttccaggaaaaagttatcccagggaaagactcc
cgatccattgagtctctatgttgggttggaggacgccttttcagtgctggcctgaatggc
gagatcgcggaatatgacctggaaaacctaagacccaagtactccctggaagcgtatggg
ggccccatttggaccataatcagcaatactcaagggacacaattagcgattggatgtgaa
gatgggacagtgaagttgtttgaagtacttgaagagcacatacagtttgagcgcaatctg
gacagacagaaaggtcgcatcatatccctctcctggcacccctctggcacacacatcgct
gctggcatgatggacatgatccgtgtctttgatgttccaactggtcatgctgtacagagg
ctcctggtggaccggggctttggaggctctaagagtcgggagacagtagtctggagcgtg
gccttcctgtcagaccatactgtcgtcagcggggactctgctgggaaggtccaagtctgg
gatggacacaccggcacgcttgtcaaaacacacctggtgaccaagtgggatgtgctggca
ctgtctgtctctaaggatgagagcagtgtggtggcagggacgtcagaaggcactgtgatc
cagttccagttcattgctcctactctgcatcagcagcaggacaaggagtgggtcagaacc
aggaccttcaagaaccacacgcatgatgtcagagccctggctgagatcgagactgccatc
gtctctggaggcatggatacccaccttgtagtgagaccccttttggagaagtttgatnng
aagtcacacgcttcaggacttcggaagatccactttccccaccggaatctagtatcctgt
gcaaagaaggcaggactactgctcttgcagttccctggtcagctggagctgtggagactg
ggagatagtgatggacatgggaagacaggagaccgcttgcctctgaagaggaagcctgag
aaactcctccttctgaagagaaagggtgaagatcatatctgctgcagtgccctgtcctcc
tgtggaggatggctagcttattccaccgtgtcctgcgtgcgtatctacaggctgcagacg
gacaataataacatcagtattaccaaggtatccaaactcccaaaggttctgcgctctgca
caccagctctgcttctcctcggactcctccaagatgtttgctgcctccagccaatcatca
gtcctcgttattgctcttacccagtctgagtgcaagtatgtgcacaccctcaagcccaag
tcagggtccagacagcccattcacctaatgactaccagtgtagatgggaagtggctggcg
gccgcaaatagtgactgtgagatccacgtctacaatctacagaaactaaagctccattgt
atagtacctgtttatggttcctgtcccagtgccatggggatccaccccaccaccaacaac
ctgaccatggtgcacgctgaccaacagttatttgagtactctatagtggagaagcagtac
acagactggagccgaaagctgcagaagcaggggctccacaacgtgtggttggaccgggac
acacccgtcacccatgtgaccttcaacccgaaaaacccaaatcaagttgtcctgcacgac
atgcacatgttctgcataattgaccaaagtctgcccctccctgaccagaagacccagttt
tacaatcagatgaccctcaggagcatatcagagcaggagaggcccagtcacctccatgct
ttcaaaatatgcaaaaccttccaggacctgctgtgtgtgagcctgttggatgaccagtct
ctggtggtggtggagcgccctctcctggccatcacatctcagctgcctgctccagtccga
cagaaaaagtttgccacataa
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