Salvelinus namaycush (lake trout): 120066682
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Entry
120066682 CDS
T07522
Name
(RefSeq) nuclear receptor ROR-alpha A isoform X1
KO
K08532
RAR-related orphan receptor alpha
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
snh03000
]
120066682
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
snh03310
]
120066682
Transcription factors [BR:
snh03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
120066682
Nuclear receptors [BR:
snh03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
120066682
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Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
120066682
NCBI-ProteinID:
XP_038874053
UniProt:
A0A8U1H854
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Position
Sna21:complement(28716140..29001043)
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AA seq
519 aa
AA seq
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MESPPDPASDPGNSASEPATPARETPVNLETLRKTDHPAPVRRQTCSSTNRGISVTKKTH
TSQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNAAYSCPRQKNCLIDRTSRNR
CQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRLQQAQRDHQQQPGEAEPLTP
TYGLSANGLTELHDDLSGYMDGHTPDGSKPDSAVSSFYLDIQPSPDQSGLDINGIKPEPI
CDFAPGSGFFPYCSFTNGETSPTVSMAELEHLAQNISKSHMETCQYLREELQQMTWQAFL
QEEIETYQTKPREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVV
FVRMCRAFDSQNNTVYFDGKYAGPDVFKSLGCDDLISSVFEFGKNLCSMHLSEDEIALFS
AFVLMSADRSWLQEKVKVEKLQQKIQLALQHVLQKNHREDGILTKLICKVSTLRALCSRH
TEKLTAFKAIYPDIVRAHFPPLYKELFGSDFEQSMPVDG
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atggagtcccctccagatccagcaagcgacccgggcaacagcgcctctgagccggctaca
ccggccagggaaaccccggtaaacctagagacgctccgaaaaacggaccatccagcccct
gttcgaaggcagacctgttcaagtaccaacagaggtatttcagtaacaaagaagacacat
acctctcaaatcgaaataattccctgcaagatctgtggagacaaatcatcaggcatccat
tacggtgtgataacatgtgagggctgtaagggcttcttcaggaggagtcagcagagcaat
gcggcttactcatgcccccgtcagaagaactgcctgatcgaccgcaccagccgcaaccgc
tgccagcattgccggctgcagaaatgtctggcagtgggcatgtcaagggacgcggtgaag
tttgggcgcatgtcgaagaagcagcgggacagcctgtatgcggaggtgcagaaacaccgg
ctgcagcaggcgcagcgggaccaccagcagcagcccggcgaggccgagccactcacaccc
acctacggcctctcggccaatggcctcacagagctccacgacgacctcagtggctacatg
gatggccacacccctgacggcagcaagcccgactcagcagtcagcagcttctacctggac
atccagccctcccctgaccagtccggactggacatcaacggcatcaagcccgagcccatc
tgcgacttcgcccccggctcaggcttcttcccctactgctcctttaccaacggagagaca
tcccccactgtgtccatggctgagctagagcacctggcccagaacatctccaagtctcac
atggagacgtgtcagtacctgagagaggagctgcagcagatgacctggcaggccttcctc
caggaggagatagagacctaccagacgaagccccgagaggtcatgtggcagctgtgtgct
atcaaaatcacagaggccatccagtacgtggtggagtttgccaagcggatcgacggcttc
atggagctgtgtcagaacgatcagatagtgctgctgaaagcaggctctttggaggttgtg
tttgtgagaatgtgccgtgccttcgactctcaaaacaacacagtctatttcgatggaaag
tatgctgggcctgatgtgtttaagtcattaggctgtgacgacttgatcagctccgtcttc
gagtttgggaagaacttgtgttctatgcacctgtctgaggatgagattgccctgttctcc
gcgttcgtgttgatgtctgcagaccggtcctggctccaggagaaggtgaaggtggagaaa
ctccagcagaagatccagctggcactgcagcatgtcctgcagaagaaccacagagaggac
ggcatacttaccaagttgatatgcaaggtgtcaacactgcgagcgctgtgcagcaggcat
accgagaagctgacggctttcaaagcaatatacccagacattgtgcgtgcccacttcccc
cccttatataaggagctctttggatcggactttgagcagtccatgcccgttgacgggtag
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