Salvelinus namaycush (lake trout): 120066717
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Entry
120066717 CDS
T07522
Name
(RefSeq) cystic fibrosis transmembrane conductance regulator-like isoform X1
KO
K05031
cystic fibrosis transmembrane conductance regulator [EC:
5.6.1.6
]
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh02010
ABC transporters
snh04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
120066717
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
120066717
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
snh02000
]
120066717
Enzymes [BR:
snh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.6 channel-conductance-controlling ATPase
120066717
Transporters [BR:
snh02000
]
ABC transporters, eukaryotic type
ABCC (CFTR/MRP) subfamily
ABCC7 subgroup
120066717
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CFTR_R
ABC_membrane
ABC_tran
SMC_N
DUF87
AAA_29
AAA_21
AAA_16
RsgA_GTPase
T2SSE
FtsK_SpoIIIE
nSTAND3
AAA_23
MMR_HSR1
nSTAND1
NB-ARC
Dynamin_N
ATP-synt_ab
MeaB
DO-GTPase2
AAA_30
NTPase_1
Motif
Other DBs
NCBI-GeneID:
120066717
NCBI-ProteinID:
XP_038874105
UniProt:
A0A8U1FDT4
LinkDB
All DBs
Position
Sna21:complement(36498971..36573560)
Genome browser
AA seq
1518 aa
AA seq
DB search
MQKSPVEDANFLSKYFFWWTSPLLRKGFRKKLELTDVYKAPYFDLADNLSERLEREWDRE
VASAKKKPRLLRALSRCFLWPFVFYGILLYFGEASKTVQPQLLGRIIGSFDPIHAPEREQ
GYYLALGLCLLFTARFLLLQPAIFGLHHLGMQIRIALFSLIYKKTLKLSSRVLDKISTGQ
LVSLMSAHLNKLDESLGLAHFVWITPLQCILCVGLIWELIEVNGFCALAALTLLGIIQAC
LSQKMGPHRQKRAGLISRRLALTSEIVENIHSVKAYGWEEVMETIIKNIRQDEMTLTRKI
GSLRYFYSASYFFSAILVIVSAIVPHALSKGIILRSIFTTASYLMVLRMTLTRQLPGSIQ
MWYDTLALVTKIEEYLCKEEYKVLEYNLTTTEVELVNVTASWDEGIGALFEKIKQENKSN
GHPNGDVGLFFTNLYVTPVLKNISLYLEKGQMLAVAGSTGSGKSSLLMMILGELVPSEGK
IKHSGRISFSPQTSWIMPGTIRDNILFGLTYDEFRYTSVIKACQLEEDLSLLPEKDKTPL
MEGGVTLSGGQRARIGLARAVYKDADLYLLDSPFTHLDIVTEKEIFERCLCKLMSSKTRI
VVTSKLDHLKRADKILLLHNGVCYFYGSFSQLQAKRPDFSSLLLGLEAYDNIKAERRSSI
LTETLRRVSIDESAVLRGPEPIRQSFRQPPPSVINGITGPQGITIAGGDSLTVVEKRKQS
IILNPLATARKFSFISTGPQNSQAPTPGSTTIEDGVRELSERKFSVVPEDDQVEESLPRG
NLYHDGLQHLSGQRRQSVLQFITNAQGQGRREQLQTSFRKKLSVTPQCELASELDIYARR
LSKDSVYNISEDVDEEDMEQCFADERENVFETTSWNTYLRYIFTNRNLVYVLIFIFLIFA
LEVAGSVLGIFLITDKIWTEEANPLAPNYVDQQHSNASSHAVQQSVIVTPTSAYYIIYIY
VATSESVLALGFFRGLPLVHTLLTVSKRLHEQMLTAVLRAPMAVLNTMKTGRIMNRFTKD
MATIDDMLPLVLFDLIQLTLIVLGAIFTVSIMRPYIFIAAIPLAVIFVVLRKYFLRTGQQ
LKQLEAEARSPIFSHLIISLKGLWTIRAFGRQCYFETLFHKALNTHTAIWFHYLSTLRWF
LFRCDIIFVFFFSAAAFIAVGTNQDKPGEIGIIVALAMLILGTFQWAVITSITVDGLMRS
VDRVFKFIDLPQEEPRPSGGGKVTDLVLDNPHAQDCWPNQGHMDVQGLTVKYTEAGRSVL
QNLSFTVEAGQSVGVLGRTGSGKSTLLSALLRLASTDGEISIDGVSWNSVTLQTWRKAFG
VVPQKIFILTGTFRMNLDPHACHSDEELWRVAEEVGLKSVIEQFPDKLDFQLEDGGYVLS
NGHKQLMCLARSILSKARILLLDEPSAYLDTITLQVLRKTLKQSFSNCTVILSEHRVEPL
LECQSFLMIEGSSMKRYDSIQKLLNETSHLKQAISAAERLKLFPLHRLNSSKRPPQSQQS
KITALQEEAEDEVQDTRL
NT seq
4557 nt
NT seq
+upstream
nt +downstream
nt
atgcagaagtcacccgtggaagatgcaaacttcctctccaaatatttcttctggtggaca
tctccactgttgaggaagggcttcagaaagaagttggagttgacagatgtttataaagca
ccatattttgatctcgcagacaatctttctgaacgactagaaagagaatgggatcgagaa
gtggcatcggccaagaagaagcctcggctcttgcgggcactctcccgttgtttcctctgg
ccttttgtgttctacggaatcctgctgtactttggggaggcgtcgaagacagtgcagccc
cagctcctgggtcgtataatcggctcgtttgaccccatccatgcccctgagcgggagcag
ggttactacctagccctgggtctctgtcttctcttcactgctcgcttcctgctcctgcag
ccagccatctttggactgcaccacctgggcatgcagatacgcatcgctctcttcagcctc
atctataagaagactctgaagctgtccagccgggtcctggacaagatcagcacaggtcag
ctggtcagcctgatgtcagcccacctcaacaaactggatgagagtcttggcctggcacac
tttgtgtggatcacccctctgcagtgcatcctgtgtgtggggttgatctgggagctgatc
gaggtgaatggtttctgtgccttggctgccctcaccctgctgggcatcatacaggcctgc
ctctctcagaagatggggcctcacaggcagaaaagagcagggttaatcagcaggcgtctg
gctctgacctcagagatcgtagagaacatccactcagtgaaggcctacggctgggaggag
gtgatggagaccatcatcaagaacatcagacaggatgagatgacgctgacgaggaagatt
ggttctctgcggtacttctacagcgcctcctacttcttctctgccatcctagtcattgtg
tcagctatcgtgccccacgccctcagcaagggcatcatcctgagaagtatcttcaccact
gcctcttacctcatggtgctccgtatgaccctcaccagacagctgcccggctccatacag
atgtggtacgacaccctggcgctggtcacaaagatagaggaatacctctgtaaagaggag
tacaaagtattagagtacaacctgaccaccactgaggtagagctggtgaacgtgaccgcc
tcctgggatgagggtatcggggcgttgtttgagaagattaagcaggagaacaagtctaac
ggccaccctaacggtgacgtagggctgttcttcaccaacctatatgttacacccgtcctc
aagaacatcagcctgtatctggagaagggacagatgctggccgtggctggatccaccggc
tccggaaagagttccctgctgatgatgatcctgggagagctggtcccgtcagaggggaag
atcaaacacagtgggcggatctccttctccccccagacctcctggatcatgcccggaacc
atccgtgacaacatcctgtttggtctgacctacgacgaattccgctacacctctgtcatt
aaggcatgtcagctggaggaggatctgtccctgctgccggagaaagacaagacgcccctt
atggagggaggggtgacccttagtggaggtcagagggcgaggataggtctggccagagcc
gtgtacaaagatgctgacctctacttgttggattcgcctttcacccacctggacattgtg
acggagaaagagatctttgagaggtgtctgtgtaaactgatgtcctccaagactcgtatc
gtggtcaccagtaagctggaccaccttaagagagcagacaagatccttctgcttcacaac
ggagtgtgttacttctacggctccttctcccagctgcaggccaagagaccagacttcagc
tccctgctcctgggcctggaggcctacgacaacatcaaagccgaacgccgcagctccatc
ctcaccgagaccctccgacgtgtctccatcgacgaatccgccgtcctccgtggccctgag
cccatccgccagtccttccgccagcccccgccttcggtcatcaacggcatcacgggacct
caaggcatcaccatcgccgggggcgacagtctcacagtggtggagaaacgtaaacagtcg
attatcttaaatccattagcaacggcacgtaagttctccttcatcagtactgggccccaa
aacagccaggccccaaccccagggtccactaccatcgaggatggcgtgcgagagctgtcg
gagaggaagttctctgtggtgcccgaggatgatcaggtggaagagtcgctgccccggggg
aacctgtaccacgacggtctgcagcacctgagtgggcagcggcgccaatctgtgctgcag
ttcatcaccaacgcccaggggcagggcaggagggagcagctccagacatccttcaggaag
aagctgtccgtcacgccgcagtgcgagctggcctctgagctggatatctacgcacgacgc
ctgtccaaagatagtgtctataacatcagtgaggatgtggatgaggaggacatggagcaa
tgctttgcagacgagcgtgagaacgtgtttgagacgacgtcgtggaacacctatctgcgt
tacatcttcaccaacaggaacctggtctacgtcctcatcttcatcttcctcatcttcgct
ctcgaggttgctggttctgtcctggggatatttcttatcacagataagatctggacagag
gaggccaacccattggcgcctaactacgtagaccaacaacactccaacgcctcgtcacac
gccgtccaacagtcagtcatcgtcacgccaaccagcgcctattacatcatctacatctac
gtggcgacgtcggagagcgttctggcgctggggttcttcagaggcctgccactggtccac
accttactgaccgtgtccaagaggctgcatgaacagatgctgaccgctgtgctcagggcc
cccatggctgtactcaacactatgaaaacaggtcggatcatgaacaggttcactaaagac
atggccaccatagacgacatgcttcctcttgtactgtttgacctcatccagttaactctg
atcgtgttgggagcaatcttcactgtgtccatcatgcggccgtacatcttcatcgccgcg
atcccattggccgtcatatttgtggtcctgaggaagtacttcctgcgtaccggacaacag
ctcaaacaactagaagctgaggcccgaagccctatcttctctcacctcatcatctctcta
aagggtctgtggaccatccgtgcgtttggacgtcagtgctactttgagacgttgttccac
aaggccctgaacacccacacggccatatggttccactacctctccacgctgcgatggttc
ctcttccgctgtgacatcatcttcgtcttcttcttcagcgccgcagccttcatcgccgtg
ggaaccaaccaggacaagccaggggagattggcatcatcgtggccttagccatgcttatc
cttggtacgttccaatgggctgtcatcaccagcatcactgtggacggactgatgcgatcg
gtagatcgggtcttcaagttcatcgacttgccgcaggaggagcctagacccagtggtggt
ggtaaagtcacagacctggtcctcgacaacccccacgcacaagactgctggcccaaccag
ggccacatggatgtccaggggctgactgtcaagtatacagaggccggacgctctgtgctg
cagaacctgtccttcaccgtggaagcgggccaaagtgtgggtgtgttggggaggacgggc
tcagggaagagcaccctgctctctgccctgctgcgcctggcctctacagacggagagatc
tccattgacggggtctcctggaactctgtcacactacagacctggagaaaagccttcgga
gtggtgccacagaaaatcttcatcctgactggaacattccgtatgaacctggatccgcac
gcttgccacagtgacgaggaactgtggcgggtggctgaggaggtgggtctgaagtcagtg
atagagcagttcccagacaagctggacttccagctggaggacgggggttatgtcctgagt
aacggacacaagcagctcatgtgtttggcccgctccatcctcagcaaggcccgtatactg
ctgctggacgaacccagcgcctacctcgacaccataacgttgcaggtcctgaggaagacg
ctgaaacagtctttctccaactgtacagtcatactgtcagaacacagagtggaaccactg
ctggagtgccagtccttcctgatgatcgagggcagttctatgaagcggtatgactccatt
cagaagcttttgaacgagaccagccacctgaagcaggccataagtgctgctgagcgcctc
aaactcttccccctgcaccgcctcaactccagcaagcgaccccctcaatcccagcagtct
aagatcaccgccctgcaagaggaggctgaggacgaggtccaggacacacgtctgtaa
DBGET
integrated database retrieval system
