Streptococcus nidrosiense: AAFQ93_01010
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Entry
AAFQ93_01010 CDS
T10825
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
snid Streptococcus nidrosiense
Pathway
snid03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
snid00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AAFQ93_01010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
snid03021
]
AAFQ93_01010
03400 DNA repair and recombination proteins [BR:
snid03400
]
AAFQ93_01010
Enzymes [BR:
snid01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AAFQ93_01010
Transcription machinery [BR:
snid03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AAFQ93_01010
DNA repair and recombination proteins [BR:
snid03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AAFQ93_01010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
XHB97343
LinkDB
All DBs
Position
complement(212905..216507)
Genome browser
AA seq
1200 aa
AA seq
DB search
MAGHDVQYGKHRTRRSFSRIKEVLDLPNLIEIQTDSFKDFLDHGLKEVFEDVLPISNFTD
TMELEFVGYEIKEPKYTLEEARIHDASYSAPIFVTFRLINKETGEIKTQEVFFGDFPIMT
EMGTFIINGGERIIVSQLVRSPGVYFNDKVDKNGKVGYGSTVIPNRGAWLELESDSKDIA
YTRIDRTRKIPFTTLVRALGFSGDDEIFDIFGDSDLVRNTVEKDIHKNPMDSRTDEALKE
IYERLRPGEPKTAESSRSLLVARFFDPRRYDLAAVGRYKINKKLNVKTRLLNQTIAEPLV
DPETGEILVEAGTVMTRSVIESIESHLDGDLNKIVYIPNDAAVVTEPVVLQKFKVVAPTD
PDRVVTIIGNANPDDKVRIVTPADILAEMSYFLNLAEGIGRVDDIDHLGNRRIRAVGELL
ANQVRLGLSRMERNVRERMSVQDNEVLTPQQIINIRPVTAAIKEFFGSSQLSQFMDQHNP
LSELSHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYGH
LNKYGFIQTPYRKVDRATGKVTNEIVWLTADEEDEFTVAQANSKLNADGTFAEKVVMGRH
QGVNQEYPASSVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPKAP
YVGTGMEYQAAHDSGAAVIAQHGGKVTYADADKVEVRREDGSLDVYHIQKFRRSNSGTAY
NQRTLVKVGDIVEKGDFIADGPSMENGEMALGQNPIVAYMTWEGYNFEDAVIMSERLVKD
DVYTSVHLEEYESETRDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEVKEGDILVG
KVTPKGEKDLSAEERLLHAIFGDKSREVRDTSLRVPHGADGVVRDVKIFTRANGDELQSG
VNMLVRVYIAQKRKIKVGDKMAGRHGNKGVVSRIVPVEDMPYLPDGTPVDIMLNPLGVPS
RMNIGQVMELHLGMAARTLGIHIATPVFDGASSEDLWSTVKEAGMDSDAKTILYDGRTGE
PFDNRVSVGVMYMIKLHHMVDDKLHARSVGPYSTVTQQPLGGKAQFGGQRFGEMEVWALE
AYGASNVLQEILTYKSDDINGRLKAYEAITKGKPIPKPGVPESFRVLVKELQSLGLDMRV
LDEDDQEVELRDLDEGMDEDVIHVDDLEKARKKAAEEAKAAFEAEEGAKAEATEEATEQE
NT seq
3603 nt
NT seq
+upstream
nt +downstream
nt
ttggcaggacatgacgttcaatacgggaaacatcgtacccgtcgtagtttttcaagaatc
aaagaagttcttgacttaccaaatttgattgaaattcaaactgattcattcaaagatttc
ctagaccatggtctgaaggaagtgtttgaagatgtattgccaatttcaaacttcacagac
acaatggagttggaatttgttggctacgaaatcaaagaacctaaatatacgctagaagag
gctcgtatccacgatgccagctattcagcacctatctttgtaaccttccgcttgattaac
aaagaaactggcgaaatcaaaacacaggaagttttctttggtgacttcccaatcatgact
gagatgggtactttcatcatcaacggtggtgaacgaatcatcgtatcacagttggtgcgt
tctccaggtgtttactttaatgacaaggtagacaaaaatggtaaagtgggttacggttca
actgttatccctaaccgtggagcttggttggaacttgaaagcgactcaaaagacatcgcc
tacactcgtatcgaccgtactcgtaagattccatttacgaccttggttcgtgcgcttggt
ttctcaggcgatgatgaaatctttgatatctttggtgacagcgatcttgttcgtaacact
gttgaaaaagatattcacaagaacccaatggactctcgtacagacgaagctttgaaggaa
atctacgaacgccttcgtccaggtgagcctaagactgctgaaagctcacgtagcttgctt
gtagctcgtttctttgacccacgtcgttatgacttggctgcagttggtcgttacaagatc
aataaaaaactcaatgttaaaacacgtttgcttaaccaaaccattgctgaaccattggta
gaccctgaaacaggtgaaatcttggtggaagctgggacagttatgactcgtagcgtgatt
gaaagcattgaaagtcatttggatggcgatttgaacaagattgtctacattccaaatgat
gctgctgtagtaacagagccagttgttcttcaaaaattcaaggttgttgcaccaactgat
ccagatcgtgttgtaacaatcatcggtaatgcaaatccagatgacaaggttcgtatcgta
acgcctgcagatatcttggctgagatgagctacttcctcaacttagcagaaggtattggt
cgtgtggacgatattgaccacctcggaaatcgtcgtatccgtgctgttggtgaattgctt
gccaaccaagtgcgtcttggactttcacgtatggaacgtaacgttcgtgaacgtatgtct
gttcaagataacgaagtactaacaccacaacaaattatcaatatccgtccagtaactgca
gctatcaaagaattctttggttcttctcaattgtcacagttcatggaccaacacaaccca
ctttctgagttgtcacacaagcgtcgtttgtctgccttaggacctggtggtttgacacgt
gaccgcgctggatatgaagtgcgtgacgtgcactacactcactatggtcgtatgtgtcca
attgaaacacctgaagggccaaacatcggtttgatcaacaacttgtcttcatacgggcac
ctcaacaagtatggtttcattcaaacaccatatcgtaaggttgaccgtgcaactggaaaa
gtaaccaacgaaatcgtttggttgacagccgatgaagaagatgagttcacagtagcgcag
gctaactctaaattgaacgcagatggcacttttgctgaaaaagttgtcatgggacgtcac
caaggggttaaccaagaatatccagcatcaagtgttgattatatggacgtttcgcctaag
caggtagttgccgttgcgacagcatgtattcctttcttggaaaacgatgactccaaccgt
gccctcatgggagccaacatgcaacgtcaggctgtgccattgattgatcccaaagcacct
tacgtgggtactggtatggaataccaagcagctcatgattcaggagctgcagttattgca
caacatggtggtaaggttacctatgcagatgctgacaaggtagaagttcgtcgtgaagat
ggctcattggatgtttaccacattcaaaaattccgtcgttcaaactcaggtactgcctac
aaccaacgtactctcgtaaaagttggcgatatcgttgaaaaaggtgatttcattgctgac
ggaccttctatggaaaatggagaaatggcgcttggacaaaacccaatcgttgcctacatg
acatgggaaggttacaacttcgaggatgccgttatcatgagcgaacgcttggttaaagat
gatgtctatacatctgtccaccttgaagaatacgaatcagaaacacgcgatacaaagctt
gggcctgaagaaatcactcgtgaaattccaaacgttggtgaagatgcccttaaagacctt
gacgaaatgggtattatccgtatcggtgctgaggttaaagaaggggatatccttgtaggt
aaagtaacacctaagggtgaaaaagacctttcagctgaagaacgtctcttgcacgctatt
ttcggagacaaatctcgtgaagttcgcgatacttcacttcgcgtaccccacggtgccgat
ggtgttgttcgtgatgttaagatctttacacgtgcaaatggtgatgaattgcaatcaggt
gttaacatgctggttcgagtttacatcgctcaaaaacgtaagatcaaggtcggagataag
atggccggacgtcacgggaacaaaggggttgtctctcgtatcgttcctgtagaagatatg
ccttaccttccagatggaactccagtcgatatcatgttgaacccacttggggtgccatcg
cgtatgaatatcggtcaggttatggagcttcaccttggtatggcagctcgtactcttggt
atccacatcgcaacaccagtctttgacggagcaagttcagaagatctttggtcaactgtt
aaggaagcaggtatggatagcgatgctaagactatcctttacgatggacgtactggtgaa
ccatttgataaccgtgtgtcagttggtgtcatgtacatgatcaaactccaccacatggtt
gatgataaattgcacgctcgttctgtcggaccatactcaacagttacgcaacaaccactc
ggaggtaaggctcagtttggtggacaacgtttcggtgagatggaggtttgggcgcttgaa
gcctatggtgcctcaaatgtccttcaagaaatcttgacttacaagtctgacgacatcaac
ggacgtttgaaagcctatgaagctattacaaaaggaaaaccaattccaaaaccaggtgtt
ccagaatccttccgagttcttgttaaagaattacaatcacttggtcttgacatgcgtgtt
cttgacgaagatgatcaagaagttgaacttcgtgatcttgacgagggcatggacgaagat
gtcatccacgtagatgaccttgaaaaagcacgtaaaaaagctgctgaagaagcaaaagct
gcttttgaagctgaagaaggtgcaaaagcggaagcaacagaagaagctactgaacaagaa
taa
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