Streptococcus nidrosiense: AAFQ93_08550
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Entry
AAFQ93_08550 CDS
T10825
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
snid Streptococcus nidrosiense
Pathway
snid03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
snid00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AAFQ93_08550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snid03019
]
AAFQ93_08550
03009 Ribosome biogenesis [BR:
snid03009
]
AAFQ93_08550
Enzymes [BR:
snid01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AAFQ93_08550
Messenger RNA biogenesis [BR:
snid03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AAFQ93_08550
Ribosome biogenesis [BR:
snid03009
]
Prokaryotic type
rRNA helicases
AAFQ93_08550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
NAT10_TcmA_helicase
DUF6363
AAA_22
Motif
Other DBs
NCBI-ProteinID:
XHB96983
LinkDB
All DBs
Position
complement(1799656..1801233)
Genome browser
AA seq
525 aa
AA seq
DB search
MKFNEFNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTL
EKIRTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGA
HIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQTLLF
SATMPEAIKRIGVQFMKEPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVEQPE
LSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAA
RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQIIENLTKK
RMKGLKPATAEEAFQAKKHVALKKIERDFADETIRGNFDKFAKDARKLAAEFSPEELAMY
ILSLTVQDPDSLPEVEIAREKPLPFKPSGNGFGGKGKGGRRGEDRRDRDRRRDNRRGERR
DDFKKGSRKNDRFEKEKCYRKDNKKPRNTSSEKKTGFVIRNKGDK
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
gtgaaatttaatgaatttaacctttctgctgatttattagcagaaattgaaaaagcagga
tttgtagaagcaagtcctatccaagagcaaaccattcctctggctcttgaaggaaaagat
gttatcggacaagctcaaacaggtacaggaaaaaccgcagcctttggcttgccaaccctt
gaaaagattcgtacagaagaagcaaccattcaagctttggtcattgcaccaacccgtgag
ctagctgtacaaagtcaggaagaactcttccgctttggtcgtagcaagggtgtaaaagtc
cgttctgtttatggtggttcaagtattgaaaaacaaatcaaggctcttaaatcaggtgct
catatcgtagttggaacaccaggtcgtctcctagatttgatcaaacgcaaggccttgaaa
ttgcaagatattgaaactcttattcttgatgaagcggacgaaatgcttaacatgggcttc
cttgaggatattgaagccatcatctctcgtgtcccagaaaatcgtcaaaccttgctcttt
tcagcaactatgcctgaagctatcaaacgaatcggggttcagtttatgaaagaacctgag
catgtgaagattgctgccaaggagttgacaactgaactagttgatcagtactatatccgt
gtcaaggaacaagaaaaatttgacaccatgactcgtcttatggacgttgaacagcctgag
ttgtctattgtcttcggtcgtacaaaacgtcgtgtagatgagttgactcgtggtctgaaa
atccgtggcttccgtgcagaagggattcatggagatttggaccaaaacaaacgtcttcgt
gtccttcgcgattttaaaaatggcaatctggatgtcctcgtagcaacggacgttgcggct
cgtggtttggatatctctggtgtaacacatgtctacaactatgacatcccacaagatcct
gaaagctatgttcaccgtattggtcgtacaggtcgtgctggtaagtcaggtcaatcgatt
actttcgtagcaccaaatgagatgggctacctccaaatcatcgaaaacttgaccaagaaa
cgcatgaagggcttgaaacctgcgacagcagaagaagccttccaagctaaaaagcatgtt
gcattgaagaaaattgaacgtgactttgcagatgaaacgattcgtggaaactttgacaaa
tttgcaaaggatgcacgtaaacttgcagccgaattcagcccagaagaattggcaatgtat
atccttagcttaactgttcaggatccagatagtcttccagaagttgaaattgcgcgtgag
aaaccattgccatttaaaccatcaggtaatggcttcggtggtaaaggcaagggaggacgt
cgtggtgaggatcgtcgagatcgtgatcgccgtcgcgacaatcgtcgtggtgaacgtcga
gatgacttcaaaaaaggcagtcgcaaaaacgaccgctttgagaaggaaaaatgttaccgt
aaggataataaaaaaccacgcaatacttcaagcgagaagaaaactggttttgtaatccgt
aacaagggtgataaataa
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