Streptomyces nigrescens: HEK616_14360
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Entry
HEK616_14360 CDS
T08756
Symbol
dnaE_1
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
snig
Streptomyces nigrescens
Pathway
snig03030
DNA replication
snig03430
Mismatch repair
snig03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
snig00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HEK616_14360 (dnaE_1)
03430 Mismatch repair
HEK616_14360 (dnaE_1)
03440 Homologous recombination
HEK616_14360 (dnaE_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
snig03032
]
HEK616_14360 (dnaE_1)
03400 DNA repair and recombination proteins [BR:
snig03400
]
HEK616_14360 (dnaE_1)
Enzymes [BR:
snig01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HEK616_14360 (dnaE_1)
DNA replication proteins [BR:
snig03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HEK616_14360 (dnaE_1)
DNA repair and recombination proteins [BR:
snig03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HEK616_14360 (dnaE_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
Motif
Other DBs
NCBI-ProteinID:
BDM67949
LinkDB
All DBs
Position
1628565..1632107
Genome browser
AA seq
1180 aa
AA seq
DB search
MAKPPFTHLHVHTQYSLLDGAARLSDMFKAANEMGMSHIAMSDHGNLHGAYDFFHSAQKA
GVTPIIGIEAYVAPESRRNKRKIQWGQPHQKRDDVSGSGGYTHKTIWAANKTGLHNLFRL
SSDAYAEGWLQKWPRMDKETIAQWSEGLIASTGCPSGELQTRLRLGQYDEARQAASDYQD
IFGKDRYFLELMDHGIEIERRVREDLLKIGKELGIPPLVTNDSHYTYAHESTAHDALLCI
QTGKNLSDPDRFRFDGTGYYLKSTEEMYAIDSSDAWQQGCDNTRLVAEQIDTTGMFEKRD
LMPKFDIPEGFTEVTWFQEEVRRGMKRRFPGGVPEDRQKQAEYEMDVIIQMGFPGYFLVV
ADFIMWAKNNGIAVGPGRGSAAGSIVAYAMGITDLDPIEHGLIFERFLNPERVSMPDVDI
DFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYPYAMGDRLTKAMP
ADVLGKGIDLDGITNPSHPRYNEAGEIRGMYENEPDVKKVIDTAKGVEGLVRQMGVHAAG
VIMSSEPIVDHAPIWVRHTDGVTITQWDYPQCESLGLLKMDFLGLRNLTIMDDAVKMVKK
NKGVELELLSVPLDDPKTYEMLCRGDTLGVFQFDGGPMRSLLRLMKPDNFEDISAVSALY
RPGPMGMDSHTNYALRKNGLQEITPIHPELEEPLKEVLGLTYGLIVYQEQVQKAAQIIAG
YSLGEADILRRVMGKKKPEELAKNFVLFQEGARKNGFSDQAIQALWDVLVPFAGYAFNKA
HSSAYGLVTYWTAYLKANYPAEYMSALLTSVRDDKDKSAVYLNECRRMGIKVLPPNVNES
EANFAAQGDDVILFGLTAVRNVGQNVVDSIIRCRKAKGKYASFPDYLDKVDAVVCNKRTT
ESLIKAGAFDELGHTRKGLTAHYESMIDNVVQVKRKEAEGQFDLFGGMGDDSADDGPGFG
LDVEFSEDEWDKTYLLAQEREMLGLYVSDHPLFGLEHVLSDKADAAISQLTGGDYSDGSI
VTIGGIISGLQRKMTKQGNAWAIATVEDLAGSIDCMFFPATYQLVSTQLVEDTVVFVKGR
LDKREDIPRLVAMEMMVPDLSEAGTNAPVTITIPTVKVTPPMVEKLGEVLSSHRGSTEVR
IKLQGARKTTVLRLDRHRVTPDPSLFGDLKVLLGPSCLAG
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
gtggccaagccgccgttcacgcacctgcacgtgcacacccagtactccctgctggacggt
gcggcgcggttgtcggacatgttcaaggcggcgaacgagatgggcatgtcgcacatcgcc
atgtccgaccacggcaacctccacggcgcctacgacttcttccactcggcgcagaaggcc
ggggtcacgccgatcatcggcatcgaggcgtacgtcgcccccgagtcgcggcgcaacaag
cgcaagatccagtggggccagccgcaccagaagcgcgacgacgtctccggttccggtggt
tacacccacaagaccatctgggcggcgaacaagaccggtctgcacaacctcttccggctg
tcctcggacgcctacgccgagggctggctgcagaagtggccgcgaatggacaaggagacc
atcgcgcagtggtccgagggcctgatcgcgtccaccggctgcccgtcgggcgagctgcag
acccggctgcgcctgggccagtacgacgaggcgcgccaggcggcctcggactaccaggac
atcttcggcaaggaccggtatttcctggagctgatggaccacggcatcgagatcgagcgc
cgggtccgcgaggacctgctgaagatcggcaaggaactcggcatcccgccgctggtgacc
aacgactcgcactacacctacgcccacgagtccacggcgcacgacgcgctgctgtgcatc
cagaccggcaagaacctctccgacccggaccgcttccgcttcgacggcacgggctactac
ctcaagtccaccgaggagatgtacgccatcgactcctcggacgcctggcagcaggggtgt
gacaacacccggctggtcgccgagcagatcgacaccaccgggatgttcgagaagcgcgac
ctgatgccgaagttcgacatcccggagggcttcaccgaggtcacctggttccaggaagag
gtccggcgcggcatgaagcgccgcttcccgggcggcgtccccgaggaccgccagaagcag
gccgagtacgagatggacgtcatcatccagatggggttccccggctacttcctcgtggtc
gccgacttcatcatgtgggccaagaacaacggcatcgcggtcggcccgggccgaggctcc
gcggccggttcgatcgtcgcctacgcgatgggcatcaccgacctcgacccgatcgagcac
gggctgatcttcgagcggttcctcaaccccgagcgcgtctccatgcccgatgtcgacatc
gacttcgacgagcgcaggcgcgtcgaggtgatccggtacgtcacggagaagtacggcgcc
gacaaggtcgccatgatcggcacctacggcaagatcaaggccaagaacgcgatcaaggac
tccgcccgcgtcctcggctacccgtacgcgatgggcgaccgcctcaccaaggccatgccc
gccgacgtcctcggcaagggcatcgacctcgacggcatcaccaacccctcgcacccccgg
tacaacgaggccggcgagatccgcgggatgtacgagaacgaaccggacgtgaagaaggtc
atcgacaccgccaagggcgtcgagggcctggtccggcagatgggtgtgcacgcggccggc
gtgatcatgtccagcgagccgatcgtcgaccacgccccgatctgggtgcggcacaccgac
ggtgtgacgatcacgcagtgggactacccccagtgcgaatcgctcggcctgctgaagatg
gacttcctgggcctgcgcaacctcaccatcatggacgacgccgtcaagatggtgaagaag
aacaagggcgtcgagctggagctgctctccgtcccgctggacgaccccaagacgtacgag
atgctctgccgcggtgacaccctcggcgtcttccagttcgacggcggcccgatgcgttcg
ctgctgcggctgatgaagcccgacaacttcgaggacatttccgccgtctcggccctgtac
cgcccgggcccgatgggcatggactcgcacaccaactacgcgctgcgcaagaacggcctc
caggagatcaccccgatccacccggagctggaggagccgctcaaggaggtcctcggcctc
acctacggcctgatcgtctaccaggagcaggtgcagaaggccgcccagatcatcgccggg
tactccctcggcgaggccgacatcctgcgccgcgtcatgggcaagaagaagcccgaggag
ctggcgaagaacttcgtgctcttccaggagggcgcgcggaagaacggcttctccgaccag
gccatccaggcgctgtgggacgtcctggtcccgttcgccggctacgccttcaacaaggcg
cactcctccgcgtacggcctggtcacgtactggaccgcgtacctcaaggcgaactacccg
gccgagtacatgtccgcgctgctgacgtccgtgcgcgacgacaaggacaagtcggcggtc
tatctgaacgagtgccgccgcatgggcatcaaggtgctgccgcccaacgtcaacgagtcc
gaggccaacttcgcggcccagggcgacgacgtgatcctcttcggcctcaccgcggtccgc
aacgtcggccagaacgtcgtcgattcgatcatccgctgccgcaaggccaaggggaagtac
gcctcgttcccggactacctcgacaaggtcgacgcggtggtgtgcaacaagcgcaccacc
gaatcgctgatcaaggccggtgccttcgacgagctgggccacacccgcaagggcctgacg
gcgcactacgaatcgatgatcgacaacgtcgtccaggtcaagcgcaaggaggccgagggc
cagttcgacctcttcggcggcatgggcgacgactccgccgacgacggccccggattcggc
ctggacgtggagttctccgaggacgagtgggacaagacctatctgctcgcccaggagcgc
gagatgctcggtctgtacgtctccgaccacccgctcttcggcctggagcacgtgctgtcc
gacaaggccgacgccgccatctcccagctcaccggcggcgactactccgacggctcgatc
gtcaccatcggcggcatcatctccggcctccagcgcaagatgaccaagcagggcaacgcc
tgggcgatcgccaccgtcgaggacctggccggctccatcgactgcatgttcttcccggcc
acctaccagctggtgtccacccaactcgtcgaggacaccgtggtcttcgtcaagggccgc
ctcgacaagcgggaggacatcccgcggctggtcgccatggagatgatggtccccgacctc
tccgaggccggcaccaacgcccccgtgacgatcaccatcccgacggtcaaggtcaccccc
ccgatggtcgagaagctcggtgaggtgctcagcagccaccgcggctccaccgaggtgcgg
atcaagctccagggcgcccgcaagaccacggtgctccgactggaccggcaccgggtcacc
cccgacccgtcgctcttcggcgacctcaaggtgctgctcggcccgtcctgcctggccggc
tga
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