Streptomyces nigrescens: HEK616_45360
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Entry
HEK616_45360 CDS
T08756
Name
(GenBank) RNA polymerase sigma factor
KO
K03090
RNA polymerase sigma-B factor
Organism
snig
Streptomyces nigrescens
Brite
KEGG Orthology (KO) [BR:
snig00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
snig03021
]
HEK616_45360
Transcription machinery [BR:
snig03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HEK616_45360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Sigma70_r4_2
HTH_Crp_2
HTH_23
DUF7343
Sigma70_ECF
MarR_2
HTH_37
HTH_3
HTH_38
GntR
MarR
DinB_2
VASP_tetra
HTH_10
Annexin_2
Motif
Other DBs
NCBI-ProteinID:
BDM71049
LinkDB
All DBs
Position
4947853..4948710
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AA seq
285 aa
AA seq
DB search
MTTVVNDTATEQHTELSADLPEVPCPSAVAPRDAREFSKLFFARLQEYEEGTHEYQYVRN
TLIEMNMSMVRYVARRYRSRGDDMEDIIQVGTIGLIKAIDRFDLVRGVEFSTFAVPYILG
EIKRFFRDTGWAVHVPRRLQELRSELAKAKEQLHNALDREPTVRELAAHLKLSEEEVIEG
LVAANGYTAGSLDTPTDPDPADQRRPLADVLGEEDPGLETVEDLHTLAPLLQTLDERERR
LIELRFGQEMTQSEIGAELGVSQMHVSRLLSRILSRLRTGMLTER
NT seq
858 nt
NT seq
+upstream
nt +downstream
nt
atgaccaccgtcgtgaatgacaccgcgaccgagcagcacaccgaactgagcgctgatctg
ccggaggtgccgtgcccgagcgcggtggccccccgtgacgcgcgcgaattctccaaactg
ttcttcgcgcgtctccaggaatacgaagagggcacgcacgagtaccaatacgtgcgcaac
acgctcatcgagatgaacatgtcgatggtgcgctatgtggcccgccgttaccgcagccgt
ggtgacgacatggaagacatcatccaggtcggcaccatcggtctgatcaaggcgatcgac
cgtttcgacctcgtccgtggggtggaattctccaccttcgccgtcccctacatcctcggc
gagatcaagcgcttcttccgcgacaccggttgggcggtgcacgtcccccgccgcctccag
gagctgcgcagcgaactggccaaggccaaggaacagctgcacaacgcgctcgaccgggag
cccaccgtccgtgaactcgccgcgcatctgaagctttcggaggaggaggtcatcgagggc
ctggtggccgccaacggctacaccgccggctcgctcgacacccccaccgatcccgatccc
gccgaccagcgccgcccgctggccgacgtcctcggggaggaggacccgggcctggagacg
gtcgaggacctgcacaccctggcgcctctgctgcagacgctcgacgagcgtgaacgccgg
ctgatcgagctgcgattcgggcaggagatgacccagtcggagatcggtgcggaactcggc
gtctcccagatgcacgtctcgcgactgctgtcccgcattctttcccggctgcgcaccggc
atgctcaccgagcgctga
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