Streptomyces nigrescens: HEK616_47990
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Entry
HEK616_47990 CDS
T08756
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
snig
Streptomyces nigrescens
Pathway
snig03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
snig00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
HEK616_47990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
snig03400
]
HEK616_47990
Enzymes [BR:
snig01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HEK616_47990
DNA repair and recombination proteins [BR:
snig03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
HEK616_47990
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
BDM71312
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All DBs
Position
5235098..5236069
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AA seq
323 aa
AA seq
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MAPTTGRGPAPYPVIEPMLASVGPLPAPHEEAAWAFEAKWDGARCIVNTAGDGTIRLVTR
AGNDATTTYPELAPLGEQLRGRIAVLDGEVVVLDPRGRPDFGLLQRRMGVVNPRRTARLA
MEHPVHLVLFDLMFLEGPLLGAPYFERRTALAGLGLRGPNWSVPGFVEGHGQQAWEASLQ
GGLEGVVAKRLTSVYLPGVRSPEWRKTKHLETLDVVIGGWLEGHGTLAGLPGSVLAGVAE
PSGLRYVGSVGSGLSERERRELAQYLGVIPLDRSPFVNPVDASDAHWAEPRLVAEIAFSG
WTSAGRLRHPIWHRLRPDLTHLG
NT seq
972 nt
NT seq
+upstream
nt +downstream
nt
atggcccccaccaccgggcgcggcccggccccgtaccccgtgatcgagccgatgctggcc
tcggtcgggccgctgcccgccccgcacgaggaggcggcctgggcgttcgaggccaaatgg
gacggcgcgcggtgcatcgtcaacaccgcgggcgacggcacgatccggctggtcacccgg
gcgggcaacgacgccacgaccacgtatccggagctggcgccgctcggggagcagctgcgg
ggccggatcgcggtgctggacggcgaggtcgtggtcctcgatccgcgcggccggccggac
ttcgggctgctgcagcgccggatgggcgtggtgaatccgcgccgcaccgcccggctggcc
atggagcacccggtccacctggtcctgttcgacctcatgtttctggaggggccgctgctg
ggcgcgccgtacttcgagcggcgcaccgcactggccgggctgggactgcgcggccccaac
tggtcggtgcccggcttcgtggagggtcacggtcagcaggcctgggaggcctcgctgcag
ggcggcctcgaaggcgtggtggccaagcggctcacctccgtgtacctgcccggggtccgg
tcacccgagtggcgcaagaccaagcatctggagaccctcgacgtggtcatcggcggctgg
ctggaggggcacggcacgctggccggactgcccggttccgtgctcgcgggggtggcggaa
ccgtccgggctgcggtacgtcggttcggtcggctcggggctgtccgaacgggagcgccgc
gaactggcgcagtacctgggggtgatcccgctcgaccgctccccgttcgtcaacccggtg
gacgcgtcggacgcccactgggccgagccccggctcgtcgccgagatcgccttcagcggc
tggacctcggccggccggctgcgccacccgatctggcaccgactgcggccggacctgacc
cacttggggtga
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