Streptomyces nigrescens: HEK616_52540
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Entry
HEK616_52540 CDS
T08756
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
snig
Streptomyces nigrescens
Pathway
snig03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
snig00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HEK616_52540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snig03019
]
HEK616_52540
03400 DNA repair and recombination proteins [BR:
snig03400
]
HEK616_52540
Enzymes [BR:
snig01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HEK616_52540
Messenger RNA biogenesis [BR:
snig03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HEK616_52540
DNA repair and recombination proteins [BR:
snig03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HEK616_52540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
RecQ_Zn_bind
Pribosyltran
Motif
Other DBs
NCBI-ProteinID:
BDM71767
LinkDB
All DBs
Position
5769707..5771872
Genome browser
AA seq
721 aa
AA seq
DB search
MSNEDLRAAADAVLTRLVGDPGGTARLREDQWRAIEALVAERRRALVVQRTGWGKSAVYF
VATALLRERGSGPTVIVSPLLALMRNQVEAAARAGIRARTINSANTEEWDTVQAEVAAGE
VDVLLVSPERLNNPDFRDQVLPKLAAATGLLVVDEAHCISDWGHDFRPDYRRLRTMLADL
PPGVPVLATTATANARVTADVAEQLGTGEGTAEALVLRGPLDRESLSLGVLPLPDAAHRL
AWLADHLHELPGSGIIYTLTVAAAEEVTAFLRHRGHTVASYTGKTENADRQQAEDDLLAN
RVKALVATSALGMGFDKPDLGFVVHLGSPSSPIAYYQQVGRAGRGVEHAEVLLLPGREDE
AIWKYFASLAFPPEEQVRQTLDVLAAAGRPVSLPALEPQVELRRSRLEIMLKVLDVDGAV
QRVKGGWISTGRPWAYDAERYAWVTRQREAEQQAMRDYATTTGCRMEFLRRQLDDEAAAA
CGRCDNCAGARFSAEVSAASLDAARGELGRPGVEVEPRRMWPTGLPAVGLDLKGRIPAGE
LATTGRALGRLSDIGWGNRLRPMLAAQAPDGPIPDDVASAVVTVLADWAKGPGGWASGEA
DAPARPVGVVCLSSRTRPQLIHSLAERIAAVGRMPFLGVVTSEEDGADTRIPRSNSAQRL
RALHGSLGVPPQLAQSLASVGGPVLLVDDYADTGWTLAVAARLLRRAGAEGVFPLVLAVQ
A
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgagcaacgaagatctgcgtgccgcggccgatgccgtcctgacccggctcgtcggcgat
cccggcggtacggcccggctgcgcgaggaccagtggcgggcgatcgaggccctggtcgcc
gagcgtcgtcgcgcgctggtcgtgcagcgcacgggctggggcaagtcggcggtctatttc
gtcgcgaccgcgctgctgcgcgagcgcggcagcggaccgaccgtgatcgtctctccgctg
ctcgccctgatgcgcaatcaggtggaggcggcggctcgggccgggatccgcgcgcgcacg
atcaattcggccaacaccgaggagtgggacaccgtccaggccgaggtggcggcgggtgag
gtggatgtcctgctggtgagtcccgagcggctcaacaaccctgatttccgtgatcaggta
ctgcccaagctcgcggcggcgacggggctgctggtggtcgacgaggcgcactgcatctcc
gactggggccacgacttccgccccgactaccggcggctgcgcacgatgctcgccgatctt
ccgccgggtgtgcccgtgctcgccaccaccgcgacggcgaacgcgcgggtgaccgccgat
gtcgccgaacagctcgggacgggtgaggggacggccgaggcgctggtgctgcgcggtccg
ctggaccgggagagcctgagtctgggggtgctgccgctgccggacgccgcacaccggctg
gcctggctcgcggaccatctgcacgagctcccgggttcggggatcatctacaccctcacc
gtcgccgccgccgaagaagtcaccgccttcctgcgtcaccgcgggcacacggtcgcgtcg
tacaccggcaagaccgagaacgccgaccgccagcaggccgaggacgatctgctcgccaac
cgcgtcaaggcgctggtggccacctccgcgctgggcatgggcttcgacaagcccgatctg
gggttcgtggtgcatctgggctcgccgtcgtcaccgatcgcgtactaccagcaggtgggc
cgggccggccgtggcgtcgagcacgccgaggtgctgctgctgcccggccgggaggacgag
gcgatctggaagtacttcgcctcgctggcctttcctcccgaggaacaggtgcgccagacc
ctggacgtgctggccgccgccggccggccggtgtcactgccggccctggagccgcaggtc
gaactgcgccgctcgcgcctggagatcatgctcaaggtgctcgacgtggacggcgccgtg
cagcgcgtcaagggcggctggatctccacgggccggccctgggcgtacgacgcggagcgc
tatgcctgggtgacgcggcagcgcgaggccgagcagcaggcgatgcgcgactacgccacc
acgaccggctgccggatggagttcctgcggcggcagttggacgacgaggcggcggccgcc
tgcggccggtgcgacaactgcgccggtgcgcggttcagcgccgaggtgtcggccgcgtcg
ctggatgccgcgcgcggtgagctggggcgtccgggcgtggaggtggagccgcggcggatg
tggccgacggggctgccggccgtcggcctcgacctcaaggggcgcattccggcgggcgag
ctggccacgaccggccgggctctgggccggctctccgacatcggctggggcaatcgactg
cgcccgatgctcgcggcacaggcaccggacggtccgattccggacgatgtggcctccgcg
gtggtcacggtcctcgccgactgggcgaaggggcccggcggttgggcatccggcgaggcg
gacgcaccggcccgcccggtgggggtggtctgcctctcctcgcgtaccaggccccagctg
atccactcgctggccgagcggatcgcggcggtcggccggatgccgttcctgggcgtggtg
acctcggaggaggacggcgccgacaccaggattccgcgcagcaacagcgcccagcggctg
cgcgcgctgcacggctcactcggcgtaccgccgcagctggcgcagagcctcgcgtccgtg
ggcggtccggtgcttttggtggacgactacgccgacaccggctggacgctggcggtggcc
gcccgtctgctgcgccgggccggagccgagggggtgtttccgctggtcctcgccgtgcag
gcgtag
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