Streptomyces nigrescens: HEK616_72200
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Entry
HEK616_72200 CDS
T08756
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
snig
Streptomyces nigrescens
Brite
KEGG Orthology (KO) [BR:
snig00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snig03019
]
HEK616_72200
Enzymes [BR:
snig01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HEK616_72200
Messenger RNA biogenesis [BR:
snig03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
HEK616_72200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
HA2_N
AAA_22
nSTAND3
AAA_16
T2SSE
NACHT
AAA_25
PhoH
NTPase_1
Zeta_toxin
SRP54
SLFN-g3_helicase
AAA_30
Motif
Other DBs
NCBI-ProteinID:
BDM73733
LinkDB
All DBs
Position
complement(7982891..7986979)
Genome browser
AA seq
1362 aa
AA seq
DB search
MSSQPASALPDGISSTPPGTAAPTLPALSARLPELMLRDAQRLGRRLDGARRIRKPEARA
AVLAEIADGIDEAELRVAQRRAALPEITYPEELPVSQKKDDILAAIRDHQVVIVAGETGS
GKTTQIPKICLELGRGVRGLIGHTQPRRIAARTVAERVAEELKTPLGEVVGWKVRFTDQV
GADTLVKLMTDGILLAEIQTDRELRQYDTIIIDEAHERSLNIDFILGYLAQLLPRRPDLK
VVITSATIDPERFARHFGSFATVGAAKATAGDGDAAPSAPIVEVSGRTYPVEVRYRPLLE
EGGQDADRDQITAICDAVDELQAEGPGDILVFLSGEREIRDTADALNKKQLPHTEVLPLY
ARLSHAEQHRVFQRHTGRRIVLATNVAETSLTVPGIRYVIDPGMARISRYSYRTKVQRLP
IEPVSQASANQRKGRCGRTSDGICIRLYSEDDFLSRPEFTDAEILRTNLASVILQMTAAG
LGDIEKFPFIDPPDRRNIKDGVQLLEELGALDPKQKDPKKRLTQTGRKLSQLPVDPRLAR
MVLEADRNGCVREVMVIAAALSIQDPRERPSDKQQQADQQHARFKDETSDFLAFLNLWRY
VREQQRELSSSAFRRMCRNEFLNYLRIREWQDIYSQLRTVAKTMGIHLSEQDAAPDHIHT
SLLAGLLSHIGLKDTDAKNEYLGARSAKFAVFPGSALFKKPPRWVMSAELVETSRLWARV
NAKVEPEWIEPLAQHLVKRTYSEPHWEQKMAAVMAYERVTLYGVPIVAQRKVNYGRIDPE
TSRELFIRNALVEGDWRTHHQFFHDNRKLLGEVEELEHRARRRDILVDDETLFDFYDRRI
PDHVVSGAHFDSWWKTKRRDEPELLNFEHSMLINESAEAVTKDDYPDSWRQGKLKFKVTY
QFEPGADADGVTVHIPLQVLNQVASDGFDWQIPGLREQLVTELIRSLPKPIRRNYVPAPN
FAARFLDSAVPLQGSLTASLAAGLQRMVGVPVDPADFDVAKVPDHLKITFRVVDERRRKL
AEAKDLEALRHKLKPKTQAAISKAFEQAAERPGRGRKGGGAAADEAAPAGVEQRTGLTSW
TIGALPRTVETRRAGQLLKAYPALVDEGGSVAVRIFDTEAAQQSAMWAGTRRLILLNIPS
NPAKFAQDKLSNQQKLALSRNPHGSIGALFDDCVTAAADRLIAARGGPAWDEESFRKLFD
AVRSDLVDVTLRTIQQVQEVLAAWQACERRLKETSFPSLLPSLTDVKEQLAQLIKPGFVT
AHGAKRLPDLMRYLIAVDRRLTQLPTNAERDRTRMAKVKEMQDEYAWLLEQFPPGRAVPA
EAREIRWMIEELRVSYFAHALGTAYPVSDKRIMKAVDAAVPA
NT seq
4089 nt
NT seq
+upstream
nt +downstream
nt
atgtccagtcagcctgcctccgccctgcccgacggcatctcctccaccccgcccggcacc
gctgctcccactctccccgcgctgagcgcacgcctgcccgagctgatgctgcgcgacgcg
cagcggctggggcgccggctcgacggcgcgcgccggatccgtaagcccgaagcccgggcg
gccgtgctcgccgagatcgccgacggcatcgacgaggccgagctgcgggtcgcccagcgg
cgggccgcgctcccggagatcacctatccggaagagctgccggtcagccagaagaaggac
gacatcctcgcggcgatccgcgaccaccaggtcgtgatcgtggccggcgagaccggttcc
ggcaagacgacccagatcccgaagatctgcctggagctcggccggggcgtgcgcggtctg
atcgggcacacccagccgcgccggatcgcggcccgtacggtcgccgaacgcgtcgcggag
gagctgaagaccccgctgggcgaggtggtcggctggaaggtccgcttcaccgaccaggtc
ggcgccgacaccctcgtcaagctgatgacggacggcatcctgctcgccgagatccagacc
gaccgcgagctgcgccagtacgacacgatcatcatcgacgaggcgcacgagcgcagcctc
aacatcgacttcatcctcggctatctggcgcagctgctgccccggcgccccgacctgaag
gtcgtgatcacctccgcgaccatcgacccggagcggttcgcgcggcacttcggctcgttc
gccacggtcggggcggcgaaggccaccgcgggcgacggcgacgcggcccccagcgcgccg
atcgtcgaggtgtccggccgtacgtatccggtggaggtgcgctaccgcccgctgctggaa
gaaggcggccaggacgcagaccgcgaccagatcaccgcgatctgcgacgcggtggacgag
ctgcaggccgaggggccgggcgacatcctggtcttcctctccggcgagcgggagatccgc
gacacggcggacgcgctcaacaagaagcagctgccgcacaccgaggtcctgccgctgtac
gcccggctgtcgcacgccgagcagcaccgcgtcttccagcgccataccggccggcggatc
gtgctggccacgaacgtcgccgagacctcgctgaccgtgccgggcatccggtacgtcatc
gacccgggcatggcccggatctcccgctacagctaccgcaccaaggtccagcggctgccc
atcgagccggtctcgcaggccagcgccaaccagcgcaagggccgctgcggccggaccagc
gacggcatctgcatccggctgtactccgaggacgacttcctctcccgccccgagttcacc
gacgcggagatcctccggacgaacctggcctccgtcatcctgcagatgaccgcggccggc
ctcggtgacatcgagaagttcccgttcatcgatccgccggaccgccgcaacatcaaggac
ggcgtgcagctcctcgaagagctcggcgcgctcgatccgaagcagaaggacccgaagaag
cggctcacgcagaccggccgcaagctgtcccagctgccggtcgacccgcggctggcgcgg
atggtgctggaggcggaccgcaacggctgcgtccgcgaggtcatggtcatcgcggccgcg
ctgtccatccaggacccgcgcgaacggccctccgacaagcagcagcaggccgatcagcag
cacgcccgcttcaaggacgagaccagcgacttcctggcgttcctgaacctctggcgctac
gtgcgcgagcagcagagggagctgtcctcgtcggccttccgccggatgtgccgcaacgag
ttcctgaactacctgcggatacgcgagtggcaggacatctactcccagctgcgcacggtc
gccaagacgatgggaatccatctgagcgagcaggacgcggcaccggaccacatccacacc
tccctcctcgccggtttgctttcgcacatcggcctgaaggacacggacgccaagaacgag
tacctcggcgcccggagcgccaagttcgcggtcttccccggctccgcgctcttcaagaag
cccccgcgctgggtgatgtccgccgagctggtcgagacctcccggctgtgggcgcgggtg
aacgcgaaggtcgagccggagtggatcgagccgctcgcccagcacctggtcaagcgcacg
tacagcgagccgcactgggaacagaagatggccgcggtgatggcgtacgagcgggtcacg
ctctacggcgtgccgatcgtcgcccagcgcaaggtcaactacggccggatcgatccggag
acctcgcgcgagctgttcatccgcaacgccctggtggagggcgattggcgcacccaccac
cagttcttccatgacaaccgcaaactcctcggtgaggtcgaggagttggagcaccgcgcc
cggcgccgcgacatcctcgtggacgacgagacgctcttcgacttctacgaccggcggatc
cccgaccacgtcgtctccggcgcccacttcgactcctggtggaagaccaagcgccgggac
gagccggagctgctgaacttcgagcactcgatgctcatcaacgaatccgccgaggccgtc
acgaaggacgactacccggattcctggcggcagggaaagctgaagttcaaggtcacgtac
cagttcgagccgggcgcggacgcggacggcgtgaccgtccacatcccgctgcaggtcctc
aaccaggtcgcctccgacggcttcgactggcagatcccgggcctgcgcgagcagctggtg
acggagctgatccggtcactgccgaagccgatccggcgcaactacgtgccggcgccgaac
ttcgcggcccgcttcctggactccgcggtgccgctgcagggctctctgacggcctcgctg
gccgccgggctgcagcggatggtgggcgtgcccgtcgacccggcggacttcgacgtggcc
aaggtccccgaccacctcaagatcactttccgggtggtcgacgagcggcggcgcaagctc
gccgaggccaaggacctggaggcgctgcggcacaagctcaagccgaagacccaggcggcc
atctccaaggccttcgagcaggccgccgaacggcccggccggggccgcaagggcggcggg
gccgcggccgacgaggcggcgccggccggcgtggagcagcgcaccggcctcacgtcctgg
acgatcggcgcgctgccgcgcacggtcgagacccggcgggcgggccagctgctgaaggcg
tacccggccctggtggacgagggcggcagcgtcgcggtccggatcttcgacaccgaggcc
gcgcagcagtcggcgatgtgggcgggcacccgccgcctcatcctgctcaacatcccctcc
aaccccgccaagttcgcccaggacaagctgagcaaccagcagaagctcgcgctgtcccgc
aatccgcacggctcgatcggggcgctcttcgacgactgcgtgaccgccgccgcggaccgc
ctgatcgcggcgcggggcggcccggcgtgggacgaggagtccttccgcaagctgttcgac
gccgtccggtccgacctggtggacgtcacgctgcggacgatccagcaggtgcaggaggtg
ctggccgcctggcaggcgtgtgagcgccggctgaaggagacgtccttcccctcgctgctg
ccgtcgctgacggacgtcaaggagcagctggcacagctcatcaagcccggcttcgtgacc
gcgcacggcgccaagcggctgccggacctgatgcgctatctgatcgccgtcgaccgccgt
ctgacgcagctgccgaccaacgccgagcgggaccgcacccgtatggcgaaggtgaaggag
atgcaggacgaatacgcctggctgctggagcagttcccgccgggccgtgcggtgccggcc
gaggcccgcgagatccgctggatgatcgaggagctccgggtcagctacttcgcgcacgcc
ctgggcaccgcgtacccggtctccgacaagcggatcatgaaggcggtggacgcggcggtg
cccgcctga
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integrated database retrieval system
