Streptomyces nigrescens: HEK616_72690
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Entry
HEK616_72690 CDS
T08756
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
snig
Streptomyces nigrescens
Brite
KEGG Orthology (KO) [BR:
snig00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
snig03016
]
HEK616_72690
Enzymes [BR:
snig01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
HEK616_72690
Transfer RNA biogenesis [BR:
snig03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
HEK616_72690
Prokaryotic type
tRNA splicing ligases
HEK616_72690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
BDM73782
UniProt:
A0ABM8A578
LinkDB
All DBs
Position
8053971..8055227
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AA seq
418 aa
AA seq
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MSYVEVPGAQVPIRMWTDPATVEDVAMQQLRNVATLPWIKGLAVMPDVHYGKGATVGSVI
AMRGAVCPAAVGVDIGCGMSAVKTSLTANDLPGDLSRLRSKIEQAIPVGRGMHDDPVAPG
RLHGFPTAGWEDFWARFEGVADAVKFRRERAVKQMGTLGGGNHFHEICIDEDQSVWIMLH
SGSRNIGKELAEYHMGVAQKLPQNQGLVDRDLAVFIADTPQMAAYRNDLFWAQEYAKHNR
EIMMALTQDVVRREFKKAKVTFGEVISCQQEDAEGHMRTVEYRPGVISCHHNYVSEERYE
GMDLLVTRKGAIHAGEGEWGIIPGSMGTESYIVRGLGNPMSFNSASHGAGRRMSRNAAKR
KFSTRDLEDQTRGVECRKDSGVVDEIPGAYKPIGQVMEQQRDLVQVVAKLKQVICVKG
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacgtcgaggtacccggcgcccaggtgcccatccggatgtggaccgacccggcc
acggtcgaggacgtggcgatgcagcaactgcgcaacgtcgccaccctcccgtggatcaag
ggcctggccgtgatgcccgacgtgcactacggcaagggcgccacggtcggctcggtgatc
gcgatgcgcggggcggtctgcccggcggcggttggcgtcgacatcggctgcggaatgagc
gcggtgaagacctcgctcaccgccaacgacctgcccggcgacctgtcccggctgcgctcg
aagatcgagcaggccattccggtgggccggggcatgcacgacgacccggtcgcccccggc
cggctgcacgggttcccgacggccggctgggaggacttctgggcgcggttcgagggggtg
gcggacgcggtcaagttccgccgcgagcgggccgtcaagcagatgggaacgctcggcggc
ggcaaccacttccacgagatctgcatcgacgaggaccagtccgtctggatcatgctgcac
tccgggtcgcgcaacatcggcaaggaactcgccgagtaccacatgggcgtggcccagaag
ctgccgcagaaccagggcctggtcgaccgcgacctcgccgtcttcatcgcggacaccccg
cagatggcggcgtaccgcaacgacctcttctgggcgcaggagtacgccaagcacaaccgc
gagatcatgatggcgctcacccaggacgtcgtccgccgggagttcaagaaggccaaggtg
accttcggcgaggtcatctcctgccagcaggaagatgccgaaggtcatatgaggaccgtc
gagtaccgccctggtgtcatcagctgccaccacaactatgtcagcgaagagcggtacgag
gggatggatctgctggttacccgcaagggagccatccacgcgggcgagggagagtggggg
atcatccccggttcgatgggtacggagtcgtacatcgtccgtggcctgggcaacccgatg
tcgttcaactcggcctcgcacggcgccggccgaaggatgagccggaacgctgccaagcgg
aagttctcgacgcgggacctggaggaccagacgcggggtgtggagtgccgcaaggactcc
ggcgtggtggacgagatcccgggcgcatacaagccgatcggtcaggtgatggagcagcag
cgggacctggtgcaggtggtcgcgaagctcaagcaggtcatttgcgtgaagggctga
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