Streptomyces nigrescens: HEK616_80340
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Entry
HEK616_80340 CDS
T08756
Symbol
dnaE_2
Name
(GenBank) DNA-directed DNA polymerase
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
snig
Streptomyces nigrescens
Pathway
snig03030
DNA replication
snig03430
Mismatch repair
snig03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
snig00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HEK616_80340 (dnaE_2)
03430 Mismatch repair
HEK616_80340 (dnaE_2)
03440 Homologous recombination
HEK616_80340 (dnaE_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
snig03032
]
HEK616_80340 (dnaE_2)
03400 DNA repair and recombination proteins [BR:
snig03400
]
HEK616_80340 (dnaE_2)
Enzymes [BR:
snig01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HEK616_80340 (dnaE_2)
DNA replication proteins [BR:
snig03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HEK616_80340 (dnaE_2)
DNA repair and recombination proteins [BR:
snig03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HEK616_80340 (dnaE_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HHH_3
Motif
Other DBs
NCBI-ProteinID:
BDM74547
UniProt:
A0ABM8A7D2
LinkDB
All DBs
Position
SNP1:628584..632015
Genome browser
AA seq
1143 aa
AA seq
DB search
MSGKRFVHLHNHTEYSMLDGAQKLKPMFAEVARQEMPAIAMSDHGNMFGAYEFQQVAKDY
AGVTPIIGIEAYVAPSSRHSRQREFWGPGGQRAVSDDGEGKDVSGGGCFTHMTMWAQSVE
GLRNLFWLSTQASYDGQFPAGKPRMDRELIAERPAGIIATTGCPSGEVQTRLRLNQFAKA
KEAAAAYQDIFGRDNYFLELMDHGLAIERGVREGLLRLAKELHLPLLATNDAHYVTQDQA
DAHDNLLCIGVGKNKDAPNRFRFSGTGYYLKTADEMRHLFAELPEACDNTLLIAERVEPY
DEVFDFVDEMPQFPDVPDGESQESWLRKEVLKGLAMRYGTPIPQHVLDRFETEMAVIGPM
GFSSYFLVVADICRYARDNAIPIGPGRGSATGSIVAYATRITELCPLQHGLLFERFLNPE
RINPPDVDLDFDDRQRDQMVRYVTDKYGDDYTAMVNTFGKIKAKNAIKDSSRILGYPFAH
GERITKALPPDQNGKSIPLDGLFDSAHPRYGECGEIRQMYDNDPDVRRVIDTARGVEGLT
RGTGVHAAAVILSKTRLTDRIPLHMRAKDGVKITGFDYPSCEGMGLIKMDFLGLRNLGVI
DQAIANIRDNRGVKLATVDALDGDPTTVVIPLDDAKTYELLAEGNTFGVFQLDGGGMRTL
LKLMEPTRFEDIAAALALYRPGPMAANAHTHYAFRKTGKQPIEPIHAELEDALEPILGTT
FHLLVYQEQIMAIARRLAGYTLGGADLLRRAMGKKKPEVLAAEWEKFHDGMAANHYSEQA
IKALWDVMLPFSGYAFNKSHTAGYGLVAYWTAYLKANYPAEYMAALLTSVGDDKDKAAVY
LADARKNGVRVLQPDVNASAAEFTAIGDDVRFGLRSVRNVGDNVIDAIVQARSKHGRFTA
FADFLDKAEIAALNKRAVDSLIKAGAFDSLGHTRKGLAAIHEGAIDSVLPVKKAAAYGQD
DLFADLGTTDADTPAFGFDFKISETEWPRRQLLAAEREMLGLYVSAHPLDGAEHILAAHR
DASIAELLGSGRTTGEIKLSGLIAGAQRKMTKQGNAWAIINLADRDGSIEVLFFPAVYPL
VQHALTEDNVISVLGRIEERDGTLNIHGRELTAVDVSSAEGGGRPPVQLYMPVHRVNRPP
SRS
NT seq
3432 nt
NT seq
+upstream
nt +downstream
nt
gtgtccggcaaacgttttgtccacctgcacaatcacactgagtattcgatgctcgacggt
gctcagaagctcaagcccatgttcgccgaggtcgcccggcaggagatgccggccatcgcg
atgagcgaccacggcaacatgttcggtgcctacgagttccagcaggtggccaaggactac
gccggcgtgacgccgatcatcggcatcgaagcgtacgtggccccctcctcccggcacagc
cggcagcgcgagttctgggggccgggtggccagcgggccgtgtcggacgacggagagggc
aaggacgtctcgggcggcggctgcttcacccacatgaccatgtgggcccagagcgtcgaa
ggcttgcgcaacctcttctggctcagcacccaggccagctacgacggccagttcccggcc
ggcaagccgcgcatggaccgtgagctgatcgccgagcgcccggcggggatcatcgcgacg
accggctgcccctcgggcgaggtccagacccgcctgcgcttgaaccagttcgccaaggcc
aaggaggccgcagccgcctaccaggacatcttcggccgggacaactacttcctggagctg
atggaccacggcctggccatcgagcggggcgtacgcgagggcctgctgcgcctggcgaag
gagctgcacctgccgctgctggccaccaacgatgcgcactacgtcacccaggatcaggcc
gacgcccacgacaacctgctgtgcatcggcgtggggaagaacaaggacgccccgaaccgc
ttccgcttcagcggtaccggctactacctcaagacagccgacgagatgcggcacctgttc
gccgagctgcccgaggcctgcgacaacaccctcctgatcgccgaacgggtcgagccctac
gacgaggtcttcgacttcgtcgacgagatgccccagttccccgacgtgcccgacggcgag
agccaggagtcgtggctgcgcaaggaggtcctcaagggcctggccatgcgctacggcacc
cccatcccgcagcacgtcctggaccggttcgagaccgagatggccgtcatcggcccgatg
gggttctcctcgtacttcctcgtcgtggcggacatctgccgctacgcccgcgacaacgcg
atccccatcggccccggccgtggttcggcgaccggctcgatcgtcgcctacgccacccgc
atcaccgaactgtgccccctgcaacacggcctgctcttcgagaggttcctcaatccggag
cgcatcaacccgccggatgtcgacctcgacttcgacgaccgtcagcgcgatcagatggtc
cgctacgtcaccgacaagtacggcgacgactacaccgccatggtgaacaccttcggcaag
atcaaggccaagaacgccatcaaggacagctcccgcatcctgggctaccccttcgcccac
ggtgagcggatcaccaaggcactcccgccggaccagaacggcaagtccatcccgctcgac
gggctcttcgactccgcccacccccgctacggcgagtgcggcgagatccgtcagatgtac
gacaacgatcctgacgtccgccgggtgatcgacacagctcgcggtgtggagggtctgacc
cgcggtaccggcgtgcacgcggctgccgtcatcctgtccaagacccggctgaccgaccgc
atcccgctgcacatgcgcgccaaggacggcgtgaagatcaccgggttcgactaccccagc
tgcgaaggcatggggctgatcaagatggacttcctgggcctgcggaacctgggcgtcatc
gaccaggccatcgccaacatccgcgacaaccgcggcgtgaagctggccaccgtggacgcg
ctggacggcgacccgacaaccgtcgtcatccccttggacgacgccaagacctacgagctg
ctggccgagggcaacaccttcggggtcttccagctcgacggcggcggcatgcgcaccctg
ctgaagctgatggagccgacccggttcgaggacatcgccgcggccctggccctgtaccga
cccggaccgatggccgccaacgcccacacccactacgccttccgcaagaccggcaaacag
cccatcgaaccgatccacgccgagctcgaagacgccctggaaccgatcctcggcacaacc
ttccacctgctcgtctaccaagagcagatcatggccattgcccggcgattggccggctac
accctgggcggcgccgacctgctgcgccgcgccatggggaagaagaaacccgaggtcctg
gccgctgagtgggagaagttccacgacggcatggccgccaaccactactcggagcaggcc
atcaaggccctgtgggacgtcatgctccccttctcgggctacgccttcaacaaatcgcac
accgccggctacggcctggtcgcgtactggaccgcctacctcaaggccaactatcccgcc
gagtacatggcggccctgctcacctccgtcggcgacgacaaggacaaggccgccgtctac
ctcgccgacgcccgcaagaacggcgtgcgcgtcctgcaaccggacgtgaacgcctcggcc
gccgagttcaccgccatcggcgacgacgtccgcttcggcctgcgctcggtgcgcaacgtc
ggcgacaacgttatcgacgccatcgtccaggcccgcagcaagcacggcaggttcaccgcc
ttcgccgacttcctggacaaggcggagatcgccgcgctgaacaagcgggcggtcgactcc
ctcatcaaggccggcgccttcgattccctcggccacacccgcaagggcctggccgcgatc
cacgagggtgccatcgactccgtcctcccggtcaagaaggccgccgcctacggccaggac
gacctgttcgccgacctcggcaccacagatgccgacacccccgccttcggcttcgacttc
aagatcagtgagaccgagtggccgcgccggcagttgctggccgccgagcgcgaaatgctg
ggcctgtacgtttcggcacaccctctcgacggggcggagcacatccttgccgcccatcgc
gacgcctccatcgccgagctcctcggctccgggcgcacgacgggggagatcaagctgtcc
ggcctgatcgccggggcgcagcgcaagatgaccaaacaaggcaatgcctgggccatcatc
aacctcgccgaccgcgacggctcgatcgaggtgctgttcttcccggcggtctacccactc
gtccagcacgctctcaccgaggacaacgtgatctcggtgctgggccggatcgaggagcgc
gacggcactctgaacatccacggccgggagttgacggcagttgacgtctcatccgccgag
ggtggcggtcggccgccggtgcagctctacatgccggtccaccgcgtcaatcgtccgccg
tcgcggagctga
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