Sulfuriferula nivalis: SFSGTM_05700
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Entry
SFSGTM_05700 CDS
T06628
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sniv
Sulfuriferula nivalis
Pathway
sniv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sniv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SFSGTM_05700 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sniv03021
]
SFSGTM_05700 (rpoC)
03400 DNA repair and recombination proteins [BR:
sniv03400
]
SFSGTM_05700 (rpoC)
Enzymes [BR:
sniv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SFSGTM_05700 (rpoC)
Transcription machinery [BR:
sniv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SFSGTM_05700 (rpoC)
DNA repair and recombination proteins [BR:
sniv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SFSGTM_05700 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
BBO99861
UniProt:
A0A809S7Y4
LinkDB
All DBs
Position
555397..559593
Genome browser
AA seq
1398 aa
AA seq
DB search
MKALLDLFKQVTQEEEFDAIKIGLASPEKIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLSKVRRDRMGHIELASPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVTDPGMTPLNRYQLLTEDDYLAKYDEYGDEFRASM
GAEGVRELLKSIDIPAEIASIRADMEKTGSDTKIKKLAKRLKVIEAFQKSGIKPEWMVLE
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIQRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQ
LRLHQCGLPKKMALELFKPFIFHKLEVLGLATTIKAAKRMVETEEPVVWDILEDVIREHP
VMLNRAPTLHRLGIQAFEPQLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEA
RTLMLASNNVLSPANGEPIIVPSQDIVLGLYYMTRERVNANGEGMKFADVDEVSRAYESR
QVELNAKVTVRIKEAFYDEQGERAEKVTRYETTVGRALLSEILPIGLDFMHINKILKKKE
ISKLINVSFRRCGLRETVIFADKLMYTGFTYATRGGMSICVDDMLVPTQKQEIISASEKE
VQEIQNQYTSGLVTQGERYNKVVDIWGRAGDQIAKAMMTQLGSEPVITRDGVATTQESFN
AIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVTQDLVIIEDDCGTRDGAVIKALVEGGDVIEPLSERVL
GRVTAQDIIHPETGETVIEAGVMLDENMVEHIESLDIDEVKVRTALTCETRYGLCAKCYG
RDLGRGYLVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRSAAISQLESKSAGEVVF
SPAMRYVTSVKGEDIAIVRSGEIIIMGENGRERERHKVPYGATLTTKNGDKIKAGHVMAM
WDPHTRPIITEYAGRIRFENVEEGSTVAKQIDDVTGLSTLVVIDPKRRAGVASKGLRPQV
KLLDDAGVEVKMAGGETPVNITFQIGAIITVKDGQDVGVGEVLARIPQESSKTRDITGGL
PRVAELFEARSPKDAGVLAPVTGTVSFGKDTKGKQRLVITDMDGQAHEYLIPKEKHVTAH
DGQVVNKGETIVDGPADPHDILALKGVAELARYITDEVQDVYRLQGVKINDKHIEVIVRQ
MLRRVSVVDVGNTKFIQGEQVERAELLIENERVVAEGKEPATFDYVLLGITKASLSTDSF
ISAASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGLAYHNARRMQKLGLDIA
TESDIFVTPETVDTEQSA
NT seq
4197 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcattgctcgacttatttaaacaagtcactcaagaagaagaatttgacgcgatc
aagattggtcttgcgtcacctgaaaaaatccgttcatggtcttatggcgaagtaaaaaag
cctgagactatcaactatcgcacgttcaagcccgagcgtgacggtctgttttgtgccaaa
attttcggcccagtaaaagattacgaatgtttgtgtggtaaatataagcgcttaaagcac
cgtggtgttatttgtgaaaaatgtggtgtcgaggttactttatccaaagtgcgtcgtgac
cgtatgggtcatatcgagttagcaagtcctgtcgcgcatatctggtttttgaaatcatta
ccatcccgcttaggtatggtgctggacatgactttgcgtgatatagaacgcgtactgtac
tttgaagcatatgtcgttaccgatcctggcatgacgccgttaaatcgctatcagttatta
actgaagatgattatctcgcaaaatatgatgagtatggtgatgagttccgtgccagcatg
ggtgctgaaggcgtgcgtgagcttttgaagagcatagatataccggctgaaatcgcttca
attcgtgccgacatggaaaaaaccggctccgataccaaaatcaaaaaattggcaaagcgt
cttaaagtcatcgaagcgttccaaaaatcaggtattaaacctgagtggatggtgctcgaa
gtcttgccggtcttgccaccagaattacgtccattagtaccgttggacggtggtcgtttt
gcgacttcagatttgaatgatttatatcgccgtgtgattaaccgtaacaatcgtttaaag
cgtttgttagagcttaaagcacctgaaattattcagcgtaacgaaaagcgtatgttgcaa
gaagcagttgactcattgctcgataacggtcgtcgcggtaaagcaatgaccggcgccaat
aagcgtccattaaaatctcttgctgacatgattaagggtaagggtggtcgtttccgtcaa
aacttgcttggtaagcgtgttgactattcaggccgttccgttattgtggttggtccacaa
ttgcgcttgcatcagtgtggtctgccgaaaaaaatggcgctggagttattcaagccattc
atattccacaagctggaagtgttaggtttggctacaacaatcaaagctgctaaacgcatg
gttgaaaccgaagagccagtcgtttgggacatacttgaagatgttatccgcgagcatccg
gtcatgcttaaccgtgcaccaaccttgcaccgtttgggtatacaggcatttgaaccacag
ttgattgaaggtaaggcaattcaattgcatcctttggtatgtgctgcgttcaacgccgac
ttcgacggcgatcaaatggcggtgcacgtacctttatcattagaagcgcaaatggaagcg
cgcacattgatgcttgcatcaaataatgtgctgtctcctgctaacggtgaacctattatt
gtgccatcgcaagatatcgttctgggtctctattatatgacccgtgagcgcgtaaatgcg
aatggtgaagggatgaaattcgcagatgtggacgaagtgtcccgtgcttatgaatcacgt
caggtcgaacttaatgcaaaagttactgttcgtatcaaggaagctttttatgacgagcaa
ggcgaacgtgccgagaaggtgactcgttatgaaacaactgtaggtcgcgcattgctttca
gaaatcttgccgataggtttggatttcatgcatatcaacaagatattgaagaaaaaagaa
atatcaaaattgatcaacgtcagtttccgtcgttgtggcttgcgtgagactgtaatcttc
gccgataaattaatgtacaccggtttcacctatgcaactcgcggtggtatgtctatttgt
gttgatgatatgttggtaccaacacagaaacaagaaattatcagcgcatccgaaaaagag
gtgcaagagattcagaatcaatatacatctggtctggtaactcagggtgagcgttataac
aaggtggttgatatctggggtcgtgctggtgatcaaattgcaaaagcgatgatgactcag
ctaggtagcgagccagttattacacgtgatggtgtagcgactacgcaagagtcattcaat
gctatttacatgatggcagattctggtgcgcgcggttcggcagctcagattcgtcagttg
gctggtatgcgtggtttgatggccaagccagatggttcgattattgagacaccgatcacg
gcgaacttccgtgaaggcttgaatgttctgcagtactttatttcaacccacggtgcgcgt
aaaggtttggctgatacggcgctgaaaacagctaactcaggttacttgacccgtcgattg
gttgatgtgacgcaagatctggtcatcattgaagatgattgcggcacacgtgatggtgct
gtgattaaagcgctggttgaaggtggtgatgtaattgagccgttgagtgaacgcgtatta
ggtcgtgtaacagctcaagacattattcatcctgagactggcgaaacagtgatagaagct
ggcgtcatgctcgatgaaaatatggttgagcatatcgaatcacttgatattgatgaagtg
aaagttagaactgcgttaacctgcgaaacacgttatggtttatgcgccaagtgttatggc
cgagatttaggtcgtggttatctggtgaacgtcggtgaggctgtgggtgtgatcgctgct
cagtcgattggtgagccaggtactcagttgaccatgcgtacgttccacatcggtggtgct
gcatcgcgttcagccgcaattagtcaacttgaatctaagtcagctggtgaggtggtgttt
agccctgcgatgcgttatgtcacaagtgttaaaggtgaagatatcgctattgtacgtagt
ggtgaaattatcattatgggtgaaaacggtagagaacgtgagcgccataaagtgccttac
ggagcgaccttaaccaccaagaatggtgacaagattaaagctggccatgtaatggcgatg
tgggatccacatacacgtccgattattaccgaatatgcaggacgcatacgttttgaaaac
gttgaagaaggttctactgttgcaaaacaaattgatgatgtaactggcttgtcaactttg
gttgttatcgatcctaagcgtcgtgctggtgtggcgagtaaagggttacgtccacaagtt
aaacttctggatgatgccggagtagaagttaaaatggcaggcggtgaaacccctgttaat
ataactttccaaattggcgctattatcacggttaaggatggacaagatgttggtgttggc
gaggtattagcacgtattccacaagagtcatctaaaactcgagatattactggtggtttg
ccacgagtagcagaattgtttgaagcgcgttcacctaaggatgctggtgtgttagctcca
gttacaggtaccgtttcatttggtaaagatactaagggtaaacaacgcttagtaattacc
gatatggatggtcaggcgcatgaatatctgataccaaaagaaaaacacgttactgcgcat
gatggtcaggtggtaaacaagggcgaaaccatagttgatggtccagcagatccacacgat
attcttgcgttaaagggtgttgcggaattggctcgatatatcactgatgaagtgcaggat
gtatatcgtttgcaaggcgttaagattaacgataagcacatcgaagttatcgtgcgtcag
atgttgcgtcgtgtaagtgttgtcgatgttggcaatactaaattcattcaaggcgaacaa
gttgagcgtgctgaactgctaatcgaaaatgagcgcgtagttgcggaaggtaaagaacca
gcaacgtttgattatgtattgctaggtattaccaaagcttcactttctacagattcattc
atctctgcggcttcgttccaagaaacaacgagagtgttaaccgaagctgcaattatgggt
aaacgtgatgagctgcgcggactgaaagaaaacgttattgtgggtcgcttaatcccagcg
ggtacgggtttggcttatcacaatgcacgacgtatgcagaaattaggtttagatatagct
actgaatctgatatttttgtaacacctgaaactgttgataccgagcagtcggcttga
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