Sulfuriferula nivalis: SFSGTM_06090
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Entry
SFSGTM_06090 CDS
T06628
Symbol
rhlE-2
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sniv
Sulfuriferula nivalis
Pathway
sniv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sniv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SFSGTM_06090 (rhlE-2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sniv03019
]
SFSGTM_06090 (rhlE-2)
Enzymes [BR:
sniv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SFSGTM_06090 (rhlE-2)
Messenger RNA biogenesis [BR:
sniv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SFSGTM_06090 (rhlE-2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
AAA_22
P-loop_SecA
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
BBO99900
UniProt:
A0A809RM81
LinkDB
All DBs
Position
complement(591685..592983)
Genome browser
AA seq
432 aa
AA seq
DB search
MSFATLGLSEAIVRAVTERGYTEPTPIQAQAIPVVMTGGDLLGGAQTGTGKTAGFVLPIL
HRLSTIPAKSDRAPIRALILTPTRELAAQVEESVREYGKYLPLKSMMMFGGVNINPQIQK
LRGRVDILVATPGRLLDHAQQRTVDLSQVEILVLDEADRMLDMGFIRDIKKIMALIPKQR
QTLLFSATFSDEIKALADSLLIKPTTIEVARRNATNTLISQKAYAVDRERKRELLTLLIK
DNNWFQVLVFTRTKHAANRLAENLDKDGIPAMAIHGNKSQAARTRALKTFKDGTLQVLVA
TDIAARGIDISELPHVVNFELPNVAEDYVHRIGRTGRAGSEGEATSLVCVDELKLLTAIE
RLTKTQIIAEVFPGFEVDPRIKAEPILNGSQRSGGGGGGQNRRPASGNGPRPAAKPAARA
PSSPHRSGGRGK
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgctaccctaggcttgtccgaagccatcgttcgcgcggttactgagcgcggt
tataccgaacctacccctatccaggctcaagccattcccgtcgttatgacagggggtgat
ttgcttggtggcgcacaaactggtacgggtaaaaccgcaggtttcgtgttgccaattttg
catcgtttatccacgatacccgccaaatctgatcgcgcaccaatacgcgctttgatttta
acgcctacgcgcgaactcgccgcacaagtagaagaaagcgtacgtgagtatggcaagtat
ctgccacttaaatcaatgatgatgtttggcggtgtcaatatcaacccacaaatccagaaa
ctgcgcggacgcgtagacatactggttgctactcctggccgtttacttgaccatgcgcaa
cagcgcaccgtagatttatcacaagttgaaattcttgtgctcgacgaagctgaccgcatg
ctggacatgggctttatccgcgacatcaaaaaaatcatggcgcttattcctaaacagcgc
caaaccttgttgttctcagcgaccttctccgatgaaatcaaagcgttagccgatagttta
cttatcaagccaaccacaatagaagtcgcacgccgcaatgctaccaacacgctgatttca
caaaaagcctacgctgttgaccgtgaacgcaaacgtgaattgctcaccctgctgattaaa
gacaacaactggtttcaagtgctggtatttacccgcaccaaacatgctgcgaatcgtctg
gctgaaaatctggataaagacggcattcctgccatggcgatacacggcaacaagagccag
gctgctcgtactcgtgcactcaagacattcaaagatggcacattacaagtactggtcgcc
accgacatcgctgcacgcggtatcgacatcagcgaattgccgcacgtcgtcaactttgaa
ctgcctaacgtcgctgaagattacgttcaccgcatcggccgtactggtcgtgcaggtagc
gaaggtgaagccacttcattggtctgcgttgatgaattaaagttattaaccgcaatcgaa
cgcctgaccaaaacccaaatcatcgctgaagtatttcctggctttgaagtagacccacgc
atcaaagcggagccgatattaaatggcagccaacgtagtggcggtggtggaggtggtcaa
aatcgccgcccagcctctggcaacggtcctcgcccagcagctaaacctgcagctcgtgca
cctagcagcccacatcgcagtggtgggcgcggaaaataa
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