Sulfuriferula nivalis: SFSGTM_08190
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Entry
SFSGTM_08190 CDS
T06628
Symbol
rhlE1
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sniv
Sulfuriferula nivalis
Pathway
sniv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sniv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SFSGTM_08190 (rhlE1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sniv03019
]
SFSGTM_08190 (rhlE1)
Enzymes [BR:
sniv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SFSGTM_08190 (rhlE1)
Messenger RNA biogenesis [BR:
sniv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SFSGTM_08190 (rhlE1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_22
Cas3-like_C_2
MucB_RseB
GWD1_pHisD
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
BBP00111
UniProt:
A0A809RMT7
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All DBs
Position
789789..791138
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AA seq
449 aa
AA seq
DB search
MAFSDLGLVPEILRAVEECGYTEPTPVQAQVIPVVLTGCDVMAGAQTGTGKTAGFTLPML
SRLAQYATSSPSPARHPIRALILIPTRELAMQVEESVQKYGKYLPLRATVVYGGVNMNAQ
IDILRGGIDILVATPGRLLDHVQNKTVNLSQVQMLILDEADRMLDMGFMPDLRRIIELLP
EGRQNLMFSATFSGEIKKLADSIMNQPQLIEVAKRNATAETVTQIVHPVHKTRKHALLTH
LIKSRQLHQVLVFCSTKLGANRLAQQLGRDGIPANAIHGDKSQQARVEALDQFKQGTIQV
LVATDVAARGIDIDQLPVVVNFDLPHAAEDYVHRIGRTGRAGASGAAISLVSDDEFRYLS
DIEKLLNKKIPSEIIPGYAPDVAVMPEFSRPVRSERGNSERNSKPSEPAPPVAKRERGDV
DVPDMPLIVRPNQPARSKQVAALFLPRKG
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atggctttttctgatctcggtctcgtacctgagatactacgtgctgtggaggagtgtggt
tacactgagcctacaccagtacaagcgcaggttattcccgttgtgttgacgggctgtgat
gtaatggcgggcgcacaaacgggcacggggaaaactgcgggatttacattgccgatgtta
agccggttagcacaatatgctaccagcagtccatctccagcacgtcatcctatacgtgcc
ctgatcttgatacctacgcgcgaattggcgatgcaggttgaagaaagcgtgcagaaatat
ggcaagtatttgcctttacgtgccactgttgtttatggcggcgtgaatatgaatgcgcaa
attgatattctgcgtggtggtatagatatccttgtggcgacacctggtcgtttgcttgat
cacgtgcaaaataaaaccgttaatttgtcgcaagtgcaaatgctcatccttgatgaggcg
gatcgtatgctggatatgggctttatgcctgacttgcgtcgcattattgaattgttgcct
gaggggcggcaaaatctgatgttctccgcgactttctcgggagagattaagaagttagca
gacagtatcatgaatcagccgcaactcattgaagtggcgaaacgtaatgcgacggcagaa
acggtgactcagattgtgcatccagtgcacaaaacccgtaagcacgctttattaacccat
ttgataaagtcccggcagttgcatcaggtattggtgttttgtagtaccaagctaggcgca
aatcgattagcacagcaattaggccgcgatggtattccagccaatgcgatacatggtgac
aaatctcagcaagcacgagttgaagcgttagaccagttcaagcaaggaactatacaagta
ctagtcgccaccgacgtagctgcgcgtggtatcgatatagatcagttacctgtggtggtg
aactttgacttgccgcatgcggctgaagattatgtgcatcgtatcgggcgtacaggtcgt
gcgggcgcatcaggtgcagcaatttcactggtgtctgatgatgagtttcgttatctgagt
gatattgaaaagctgcttaataaaaaaattccatctgaaattattcctggttacgcacct
gatgttgctgtcatgcctgagttctcacgaccagtacgtagcgagcgtggcaatagcgag
cggaatagtaaaccatccgagccagcaccaccggtagctaaacgtgaacgcggtgatgtt
gatgtgcctgacatgcctttgatagttcgccccaatcagcctgcccgtagtaagcaagtc
gccgctttgttcttgccacgtaagggttga
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