Sulfuriferula nivalis: SFSGTM_10000
Help
Entry
SFSGTM_10000 CDS
T06628
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sniv
Sulfuriferula nivalis
Pathway
sniv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sniv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SFSGTM_10000 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sniv03019
]
SFSGTM_10000 (rne)
03009 Ribosome biogenesis [BR:
sniv03009
]
SFSGTM_10000 (rne)
Enzymes [BR:
sniv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
SFSGTM_10000 (rne)
Messenger RNA biogenesis [BR:
sniv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SFSGTM_10000 (rne)
Ribosome biogenesis [BR:
sniv03009
]
Prokaryotic type
rRNA processing factors
SFSGTM_10000 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DUF4820
Motif
Other DBs
NCBI-ProteinID:
BBP00292
UniProt:
A0A809S8K8
LinkDB
All DBs
Position
complement(977929..980823)
Genome browser
AA seq
964 aa
AA seq
DB search
MKRMLFNATQAEELRVAIVDGQKLVDLDIESANKEQRKSNIYKGIVTRVEPSLEAAFIDY
GNDRHGFLPFKELSRACYSGEAAESGRPRIQDVLREGQELIVQVEKDERGNKGAALTTYI
SLAGRYLVLMPNNPRGGGVSRRIEGEERNDLRDVMAQLAIPAGMSIIARTAGIGRGVEEL
QWDLNYLLQLWSAIDGAANSQKGAFLIYQESSLVIRAIRDYFQPDIGEILIDTEDVYEQA
HQFMSHVMPGNVHKVKLYKDDVPLFSRFQIEHQIETAFAREVSLPSGGAIVIDHTEALVS
VDVNSARSTRGTDIEQTAFNTNLEAAEEVARQLRLRDLGGLVVIDFIDMESQRNQRDVEN
RLRDALHFDRARVQTGKISKFGLMELSRQRLQPSLGESSHLPCPRCNGTGFIRGIESTAL
HILRIIQEQAMKDQTGAIHAQIPVDVATFLLNEKRADIFAIESRLKVSVVLIPNIHLVTP
HYKITRLRHDEINPLEMLTPSYRLSETIEEVTPVENNKKESKPSTQVPAVRGITPAQPAP
IVEQKTAESEANATAAAKTGLIGRIFGWLQKFSDEKPVEAAPVAVQASTRPSNNESRNRN
RNRNDRGGERNGEPRPPRKDNRVEEGRTEAKTDNMAERPARNEQRNDRPPRQERAPRPAQ
TNVAADGNTDNKPKAENTRKPRPPRQPRPEVDGNVAVVTATTENTTPESTANTDVATGNE
PRPNGEPRSRRGRRGGRRERRPDQVNSDGSSAAETIETSPSVTNVEQTGNTPTIEEIQTV
APVEHIEVKPAEAEAEAEPTVVVTATPIASNSTMEATTPVATAATQMDIFAPAPATAQPL
SPPIAEPVVEDKPATVDTANINNLLAELLAPSADAANLQMVETAAAQPAASAVEPVTKPR
VQRVRAIETVVLDEPLQQVETAAKAEVVVPAAMTAAIPRVRTALQQSAQNNEEEAPLVQI
ETKL
NT seq
2895 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttatttaacgcaacacaggcagaggaattgcgtgttgctattgttgat
ggtcaaaaattagttgacctggacatagaatctgcaaacaaagaacaacgtaaaagcaat
atttacaagggtattgttacccgtgtagaacccagtctggaagctgctttcatcgattac
ggcaatgaccgtcatggctttttgccgttcaaggaactatcccgagcatgttactctggc
gaagccgctgaatcaggtcgcccacgcatacaagacgtattgcgtgaaggccaggaactc
attgttcaggtcgaaaaagatgagcgtggcaacaaaggtgcggcactcactacatacatc
agccttgcaggccgctaccttgtcttaatgcctaacaacccacgtggtggtggcgtatca
cgtcgtatcgaaggtgaagaacgcaatgacctgcgtgatgtgatggcgcaactggctatc
ccagcggggatgagcatcattgctcgcaccgcaggtatcggtcgtggcgttgaagaattg
cagtgggatttaaactatttgctccaactctggagtgcaatcgatggtgctgccaacagt
caaaaaggcgctttcttgatctatcaggaaagcagcctggtcatacgtgccatccgtgac
tacttccagcctgacatcggcgagatcctgattgacactgaagatgtgtacgaacaggca
catcagttcatgagtcatgtcatgcctggcaatgtacacaaagttaaactgtacaaagac
gatgtaccactattttcgcgcttccagatcgaacatcagatcgaaaccgcatttgcacgt
gaagtgtctctgccttctggtggcgcaattgttattgaccacacagaagcactggtgtca
gttgacgtaaactcagcgcgctcaacacgtggcacagacatcgaacaaaccgccttcaac
actaacctggaagctgctgaagaagtcgcccgccagttacgtctgcgtgacttaggtggt
ctggttgtaatcgactttatcgatatggaaagccagcgtaatcaacgtgatgttgaaaac
cgtttgcgtgatgcactgcattttgaccgagctcgcgtccaaacaggcaaaatctccaaa
tttggcttgatggaattatcacgtcaacgcctgcaaccttcactcggtgaatccagccat
ctgccttgcccacgctgtaacggcactggtttcattcgcggtatagagtcaaccgcattg
cacattttgcgcatcattcaagaacaggcaatgaaagatcaaacaggtgcgatacatgca
caaatccctgttgatgttgccaccttcttgttaaacgaaaaacgcgctgacatttttgcg
attgaatcacgtctgaaagtcagcgtggtgttaattcctaacatccatttagttacaccg
cattacaagattacccgtttgcgccatgacgaaattaatccgttagaaatgctcacacct
agttatcgtttgagcgaaactatcgaagaagtcacaccagttgaaaacaataagaaagaa
tccaagccttcaacgcaagtgccagctgtacgcggtatcacacctgcgcagcccgcacct
atcgttgagcaaaaaacagctgaatctgaagcaaatgccaccgctgcagctaaaacagga
cttattggtcgtatctttggctggttacagaaatttagtgatgaaaaaccggttgaagct
gcaccagtagcagttcaagccagcacccgcccatcaaacaatgaatcacgtaaccgtaat
cgcaaccgcaacgacagaggcggtgagcgtaatggcgaaccacgtcctccacgcaaggac
aatcgcgttgaagaaggccgtaccgaagccaaaaccgacaatatggcagagcgtccagcc
cgtaatgagcaacgcaatgacagaccaccccgccaggagcgtgcgccacgtccagcacag
accaacgttgcagcagatggcaacactgacaacaagcctaaggcagaaaacacacgcaaa
ccgcgtccaccacgtcagccacgcccagaagttgatggtaacgtagcagtagtgactgca
accacagaaaacacaacacctgaatcaacggctaacaccgatgtcgcaactggcaatgaa
ccaaggccgaatggcgaaccacgcagtcgccgtggccgtcgtggcggtcgtcgtgaacgc
agacctgaccaggttaacagtgatggttccagcgctgctgaaacaatagaaaccagtccg
tcagtcaccaatgtcgaacagactggcaatacgccgaccattgaagaaattcagacagtt
gcacctgttgaacacatcgaggtcaaaccagctgaggctgaggctgaggctgagccaacc
gtcgtggtaacggctaccccaattgctagcaatagcaccatggaggcaactacacctgta
gcaactgcagcaacgcagatggacatattcgcgccagcgccagcaactgctcagccgcta
tctccaccaatcgctgaacccgttgtggaagacaaaccagctacagtggatacagcgaat
ataaacaatctgttagctgaattacttgcgccatcagctgacgctgccaatttacaaatg
gtcgaaactgctgctgcacaaccagcagcaagcgctgtcgagcctgtcacaaaaccacgt
gttcagcgagtcagagcaattgaaaccgtagtattggatgagccgttgcagcaggttgaa
accgcagccaaagctgaagtagttgtgccagcagccatgacagctgcgataccgcgtgtg
cgtacagctttacaacaaagcgcacaaaacaatgaagaagaagcgccattggtgcaaatt
gaaaccaagctttaa
DBGET
integrated database retrieval system
