Sulfuriferula nivalis: SFSGTM_12450
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Entry
SFSGTM_12450 CDS
T06628
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sniv
Sulfuriferula nivalis
Pathway
sniv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sniv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SFSGTM_12450 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sniv03400
]
SFSGTM_12450 (mfd)
Enzymes [BR:
sniv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SFSGTM_12450 (mfd)
DNA repair and recombination proteins [BR:
sniv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SFSGTM_12450 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
SNF2-rel_dom
UB2H
ERCC3_RAD25_C
Cas3-like_C_2
AAA_30
HemY_N
Motif
Other DBs
NCBI-ProteinID:
BBP00537
UniProt:
A0A809SDF4
LinkDB
All DBs
Position
complement(1232769..1236176)
Genome browser
AA seq
1135 aa
AA seq
DB search
MLINQPIPPAGQRLSIGGLVGSADALAISELATPQRPIVVLTANALDAQRLLDEMRWFAP
KLTVSLLPDWETLPYDHFSPHQDLISERLATLYQISQSQCDIAIVPVTTALYRLAPPSYL
GAYTFFLIQGQKLDLDALRKQMATSGYTAVSQVLSPGEFSVRGGLLDLFPMGSALPYRID
LFDDEIESIRTFDVDTQRSIYPVKEIRLLPAREFPLDEAGMALFRQNFRDCFEGDASKRQ
IYKDVSNGLAPAGIEYYLPLFFEQTATLFDYVPENALICLHGDIETATQTFWQDTETRYK
LMRGDPQRPIMPPADLFLATDVLFGNLKRYARVEIDTATVNNPHTAPLPTLNVERREDEP
LHRIHHFLDTFPGHVLIFAESLGRRETMAQYFAEHGIKLALCEDYTTCTADLNQPRLGVA
PLAHGFILQSDPPVAFVTEAELYATTVRTRGRNSHRRSQVDGMLRDLSEVKVGDPVVHAD
HGIGRYLGLVSMDLGEGETEFLLLEYAGDDKLYVPVSQLHLIGRYSGGAPESIALSKLGS
GNWEKAKRRAMEQARDTAAELLNLYARRAARQGHAFTLKQHDYEAFVEGFGFEETIDQAS
AITAVIDDLCSARPMDRLVCGDVGFGKTEVALRAAFVALMDGKQVAVLVPTTLLAEQHFQ
NFSDRFADWPVRIAELSRFRSAKEQTQAMAGLAAGTIDIVIGTHKLLQKDVVFKNLGLVI
IDEEHRFGVRQKEQMKVLRAEVDMLTLTATPIPRTLAMSLEGIRDFSVITTPPQKRLSIK
TFVSRYSDGVIREAVLRELKRGGQIYFLHNEVDTIYNMEARLAKLLPEARIRVAHGQMPE
RELEHVMRDFHQQQVNLLLCTTIIETGIDIPTANTIIMNRADKFGLAQLHQLRGRVGRSH
HQAYAYLLTPEEDAITPAAKKRLEALQMMEDLGAGFHLAMHDLEIRGAGEVLGDSQSGSM
QEIGFSMYNDMLNHAVAALKKGLEPDMNQPLGVTTEINLHTPALLPTNYCGDIHERLVLY
KRLANCTEQDALDDLHAELVDRFGLLPEPALALLESHRLRLLAKPLGIAKLDASNEAIGL
QFIPKPPIDPMRLIELIQTRRHYKLAGPDKLRVTLTSKDLADRVKNVRNLLKELS
NT seq
3408 nt
NT seq
+upstream
nt +downstream
nt
atgctgattaaccaacccataccccctgctggtcaacgtttaagcatagggggcttagtc
ggatcggctgatgccttagcgattagcgaactcgccacaccacagcgacctatagttgtg
ctcaccgcaaatgcactggatgctcagcggttgctggatgaaatgcgctggttcgcaccc
aagttaacagtcagcttattgcccgactgggaaacactaccctacgatcacttttcgcca
catcaggatttaatttctgaacgtctggccacgctataccaaatttcccaaagtcagtgt
gatatcgccatcgtgccggtcactacagcactgtaccgacttgccccacctagctattta
ggtgcttatactttctttctgatccaaggccaaaaacttgatctggatgcgctacgtaaa
caaatggcgacgtcaggttatacagcggtgagtcaggtattatcgcctggcgaattcagt
gtacgtggcggtttgctcgatttgttccctatgggcagcgcactaccctatcgaatcgat
ttatttgatgacgaaatagaaagcatacgcacgtttgacgtcgatacgcagcgcagtatc
tatcccgtaaaagaaatccgtttactgcctgcacgtgaattcccattggatgaagccggc
atggccttgttccgccaaaatttccgtgactgttttgaaggtgatgcgtccaagcgtcag
atatataaagacgtcagcaatggtctcgcgccagcggggatagaatattacttaccactg
ttttttgaacagactgcaaccttgtttgactatgtgccggaaaacgcattgatttgcctg
catggtgatattgaaaccgccacacaaacattctggcaggatacagaaacccgctataaa
ctgatgcgtggcgacccccaacgcccaatcatgccacccgcagatttgtttttagccacc
gacgtgttatttggcaacctcaaacgctatgcccgcgttgaaattgatacagcaaccgtc
aacaacccacatacagcgccgctgcctacactcaacgtcgaacgccgtgaagacgaacca
ctgcaccgcattcatcatttcctggacacctttcctggtcatgtgctgattttcgctgaa
agtctggggcgacgcgaaaccatggcgcagtattttgctgaacatggcatcaaactggcc
ttgtgtgaagattacaccacatgtaccgcagacctgaaccagcccagattaggcgtagcg
ccactcgcacacggtttcattttgcaatccgacccacccgttgcgtttgtaaccgaagcc
gagctctacgccactacagtacgcacgcgtgggcgtaacagccatcgccgcagccaggtt
gacggcatgctgcgtgatttatctgaagtcaaagtgggtgaccccgtagttcacgccgac
cacggtatcgggcgttatctgggtttagtcagcatggatctcggcgaaggcgaaaccgaa
tttctgttgctggaatatgcaggtgacgacaagctctatgtgccggtgtcgcaactgcac
ctaattggtcgttatagcggcggtgcgccagaatcaattgcgttatccaaattaggcagc
ggcaactgggaaaaagccaaacgccgcgcgatggagcaagcacgcgataccgcagcagaa
ttacttaatctctacgctcgccgtgctgcccgtcaaggacatgcatttacgctcaagcag
catgactatgaggctttcgtcgaaggctttggctttgaagaaaccatagatcaggccagc
gcaattaccgccgtaatcgacgacctgtgctcggcacgtcccatggacaggctggtatgt
ggtgatgtcggctttggcaaaaccgaagttgcactccgtgctgcttttgttgcgctgatg
gatggaaagcaagtcgccgtactggttcctacgaccttgctagcagaacaacatttccag
aatttctccgaccgctttgccgattggcccgtgcgtatcgccgaattatcccgtttccgc
tccgccaaggaacaaacacaagccatggcaggactggcagcaggtaccatcgatatcgtc
atcggcactcataaattattgcaaaaagatgtcgtcttcaaaaatctggggctggtcatc
atcgacgaagaacatcgctttggcgtacggcagaaagagcaaatgaaagtactgcgagca
gaagtcgatatgcttacccttaccgctacgccgatacctcgcaccttggcgatgtcgctg
gaaggtatacgtgacttctctgtcatcaccacaccaccacagaaacgcctgtcgattaaa
acgtttgtttcccgttattccgatggcgtgatacgtgaagccgtactgcgtgaactcaag
cgcggtgggcaaatatacttcctgcacaacgaagtcgataccatctacaacatggaagca
cgactggcaaaactgctacccgaagcgcgtattcgcgtcgcccatggtcaaatgcctgag
cgtgaactggaacatgtcatgcgtgacttccatcagcaacaggtcaatctgctactttgc
accacgattatcgagacaggtatcgacatccccaccgccaacaccatcatcatgaaccgc
gccgacaaattcggtctggcgcagttgcatcagttgcgtggacgggtcggacgctcgcat
catcaggcctacgcctacctgctcacgcctgaggaagacgcgattacccctgcggcaaag
aaacgtctggaagcgttgcaaatgatggaagatctgggtgctggtttccatctcgccatg
cacgatctggagatacgtggcgcaggtgaagtactgggtgactcacagagcggcagcatg
caggaaatcggcttcagcatgtataacgacatgctcaaccacgctgtcgcagcactaaag
aaagggctggagccggacatgaaccagccgctgggtgtgactacggaaatcaatctgcac
acccctgccctgcttcctaccaactactgtggtgacatccatgaacgtctggtgttatac
aaacgcctcgccaattgcactgaacaagatgcacttgatgatctgcatgccgaactggtt
gaccgctttggtttgttgcctgagcccgccctggccctgctcgaatcgcatcgtctgcgg
ttgctcgccaaaccacttggcatcgccaaactggatgcatccaacgaggctatcggcctg
caatttattcccaaaccacctatcgacccgatgcgcctgatagaattaatccagacccgt
cgtcattacaaactggccggccccgacaaattgcgcgtcaccctaaccagcaaagacctc
gctgaccgcgtaaaaaatgttagaaacttattgaaagaactgagctaa
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