Sulfuriferula nivalis: SFSGTM_27510
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Entry
SFSGTM_27510 CDS
T06628
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
sniv
Sulfuriferula nivalis
Pathway
sniv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sniv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SFSGTM_27510 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sniv03021
]
SFSGTM_27510 (rho)
03019 Messenger RNA biogenesis [BR:
sniv03019
]
SFSGTM_27510 (rho)
Transcription machinery [BR:
sniv03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
SFSGTM_27510 (rho)
Messenger RNA biogenesis [BR:
sniv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SFSGTM_27510 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
S1CSD-TOTE-2
NACHT
OB_RNB
AAA_19
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BBP02043
UniProt:
A0A809SAJ5
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All DBs
Position
2899367..2900629
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AA seq
420 aa
AA seq
DB search
MHLSDLKLLHVTELVEMATANSIEGANRLRKQELIFALLKNQAKKGVSIFGEGTLEVLPD
GFGFLRSPNTSYLASPDDIYISPSQIRRFNLHTGDSIEGEIRIPKDGERYFALVKVDKVN
SDAPENAKNKILFENLTPLHPTEPLLLERDIRAEENITGRIIDMIAPIGKGQRGLLVASP
KSGKTVMLQHIAHAITSNHPDITMIVLLIDERPEEVTEMTRSVRGEVVASTFDEPATRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALQRPKRF
FGAARNIEEGGSLTIIATALVDTGSRMDDVIFEEFKGTGNMEIHLDRRMAEKRLYPAINV
NRSGTRREELLIKNDILQKIWVLRKLLYPMDDLEAMEFLLDKVKATKNNAEFFDSMRGGR
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgcatttatcagacctgaaactacttcacgtcaccgaactcgtagaaatggcaacagcc
aattccatcgaaggtgctaaccgcttacgcaagcaagagcttatttttgccctgctcaaa
aaccaggccaaaaaaggcgtcagcatatttggtgagggcacgctagaagtcctgccagat
ggctttggcttcttacgctccccaaacacttcgtatcttgccagtcctgatgatatttat
atctcaccctcgcaaatacgccgcttcaatttacatacaggcgactccatcgaaggcgaa
attcgcattcctaaagatggtgaacgttattttgcactggtaaaagtcgacaaagttaac
agcgacgcgccagagaatgccaaaaacaaaatcctgtttgaaaaccttaccccgttacac
cctaccgaacccttgttactcgagcgcgatatccgcgctgaagaaaacatcactggccgc
atcatcgacatgatagcgcctatcggtaaaggccaacgtggattgctggttgccagccca
aaatccggtaaaactgtcatgttgcaacatatcgcgcatgcgattaccagcaaccaccct
gacatcaccatgatcgtcctgctcatcgacgaacgtcctgaagaagtgactgaaatgacg
cgctcagtacgtggcgaagtcgttgcttccacctttgacgaacccgcaactcgccacgtg
caagttgctgaaatggttatcgaaaaagcaaaacgtctggttgagcataaaaaagacgtc
gtcatcttgctagactcaattacccgtctggcacgtgcttacaacaccgttatcccatca
tcaggcaaagtattgaccggtggtgttgatgcgaatgctttacaacgccctaaacgcttc
tttggtgcggcccgtaacatcgaagaaggtggttcactcaccatcatcgctaccgcactg
gttgataccggcagccgtatggatgacgtgatctttgaagaattcaaaggtacgggcaat
atggaaatccatcttgatcgccgtatggctgaaaagcgtctgtatcctgcaatcaacgtc
aatcgttctggcacacgtcgtgaagagctgcttatcaagaatgacatactacaaaaaatc
tgggtgctgcgtaaactgctctatcctatggatgatctggaggcgatggaattcttgctg
gacaaggtcaaagccactaagaacaatgcggagtttttcgattccatgcgtggtggtcgt
taa
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