Sulfuriferula nivalis: SFSGTM_30820
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Entry
SFSGTM_30820 CDS
T06628
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
sniv
Sulfuriferula nivalis
Brite
KEGG Orthology (KO) [BR:
sniv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sniv03016
]
SFSGTM_30820
Enzymes [BR:
sniv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SFSGTM_30820
Transfer RNA biogenesis [BR:
sniv03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
SFSGTM_30820
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Gene cluster
GFIT
Motif
Pfam:
RNB
WHD_RNase_II
Motif
Other DBs
NCBI-ProteinID:
BBP02374
UniProt:
A0A809RNM0
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Position
complement(3223386..3225263)
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AA seq
625 aa
AA seq
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MHLLYEEDGHFKAGTIVTDNDSSLQVDSQHGKRVKVKLLNVMMRFATPTPTEMMSAAQQV
RDDTDADFLWEVASQEEFGFIELGTEYFGHTPTPIESAGILMRLHESPMHFYKKGRGRYK
AAPAEALAAAKAGVERRQREAETLAAYVTELTNFTLPEALSDQIDALLYAPDKNQIAWKA
IDAACKLTCLTPVKLLHRCGAIPSSHDYHLQLFLREHFPRGTGFTEVESAPAMPELPVAE
VAAFSIDDASTTEIDDAFSVQRMENGNWQVGVHIAAPALGILPDSAMDTIAAQRLSTVYY
PGGKITMLPEDVVNGYTLSEGRVVPALSMYIEIDADYQVLGQHTKLETVPIVANLRHECL
EQDFNHANLIGDCPAYSYQDELTLLWHFSGALEAARGKTPDPKLPPRTDYNFKVENDRVT
ITDRQRGNPIDRVVSELMIFVNANWGKWLADTETMALYRTQQNGKVKMSAKPGPHVGLGV
EQYTWSSSPLRRYIDLVNQRQLIALAQGEAPPYPPKASVLYTILRDFELAHDAYNDFQRK
MERYWCLRWLQQENLSEINANVIKENLVRLDGLPFVARVPSLPELAVGTRVGLTIDIIDL
FEVELICGFHHKIEVVEDEADSLDA
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgcatttactttatgaagaagacggccattttaaggctggtacgatagtcactgacaac
gacagctccctgcaagtggatagccagcatggcaaacgggttaaggtcaaattattaaac
gtcatgatgcgtttcgccacaccgacgccgactgaaatgatgtcagccgctcagcaagta
cgcgatgacaccgatgccgattttttatgggaagttgccagccaggaagagtttggtttt
atagaactcggtactgaatatttcggacacacgccgaccccaatagaatccgccggcata
ttaatgcggctgcatgaatcccccatgcatttctacaaaaaagggcgcggtcgttacaaa
gccgcacccgcagaagcactagcggctgcaaaagcgggcgtcgaacgacgacaacgtgaa
gccgaaaccttagcagcctatgtcacagagctaacgaatttcacgctaccagaagcatta
tccgatcaaattgacgctctactttacgccccggacaaaaatcaaatagcgtggaaagcc
atagatgccgcatgcaaattaacttgtctgacaccagttaaattgctacaccgctgtggc
gccattccttccagccacgactatcatctgcaactatttttacgtgagcatttcccgcgc
ggcactggtttcacagaggtagaatccgcacctgccatgcctgaactccccgtagccgaa
gtcgctgcattcagcatagatgatgcctccaccaccgaaatcgacgatgctttttctgtg
cagcgtatggaaaacggcaattggcaagtcggcgtacatatagccgcacctgcgttaggc
atactgcctgactcggcaatggatacaatcgcagcacaacgcctatccacagtctattat
ccaggcggcaaaatcactatgctgcctgaggacgtggtcaatggttacaccctgagtgaa
ggtcgcgtagtgcctgcgctatcgatgtatatagaaatcgacgcagactatcaggtactc
ggccagcacaccaaactcgaaaccgtgcctatcgtcgccaacttacgccatgaatgcctg
gaacaggatttcaatcacgccaacttgatcggtgattgccctgcctattcatatcaggac
gagctcaccctgctctggcatttttcgggtgcacttgaagccgcacgtggcaaaacccct
gatcctaaattgccaccgcgtacagattataatttcaaggtagaaaatgaccgcgttacc
attactgacaggcagcgtggcaaccctatagatcgcgtcgtttctgagttgatgatattc
gtcaacgctaactggggtaaatggctagccgacaccgaaaccatggcactctaccgcacc
cagcaaaacggcaaagtcaaaatgagcgcaaaaccaggtccgcacgtagggctgggagtc
gagcaatatacctggtccagttcgccattacgtcgctatatagacttggtgaatcaacgc
cagctcatagcccttgctcaaggcgaagcgccaccatacccacccaaagccagtgtgctc
tacacaattttgcgtgattttgaattagcgcatgatgcatacaatgattttcaacgtaaa
atggaacgttactggtgtctgcgctggttacaacaagaaaacctcagcgagatcaatgcc
aacgtaataaaagaaaacctggtgcggctcgatggcttgccattcgtggcacgcgtaccg
tcgttaccagagctggctgttggcacccgagtaggcttgaccatagatatcatcgatttg
tttgaggtcgaactaatatgcgggtttcaccataaaatagaagttgttgaagatgaggca
gattcattagacgcatga
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