Sphingomonas sp. NIC1: A7E77_02955
Help
Entry
A7E77_02955 CDS
T04479
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
snj
Sphingomonas sp. NIC1
Pathway
snj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
snj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A7E77_02955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
snj03400
]
A7E77_02955
DNA repair and recombination proteins [BR:
snj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
A7E77_02955
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
A7E77_02955
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
UB2H
AAA_30
DUF87
AAA_22
SWI2_SNF2
AAA_16
TrwB_AAD_bind
Microtub_bd
eIF3_p135
Motif
Other DBs
NCBI-ProteinID:
ANC85932
LinkDB
All DBs
Position
580002..582191
Genome browser
AA seq
729 aa
AA seq
DB search
MAIQIRTTLDEPETGQSFIPHRPARPDKVEGGRPFKLVSEYQPSGDQPTAIAELTATARA
GEKDQVLLGVTGSGKTFTMAKVIEELQRPALILAPNKILAAQLYGEFKSFFPENAVEYFV
SYYDYYQPEAYVPRSDTYIEKESSTNESIDRMRHSATRSLLERDDVIIVASVSCLYGIGS
VETYSAMIFDLKKGTTVDQREIVRKLVALQYKRNDAAFQRGNFRVKGDTLEIFPSHYEDS
AWRISFFGDDIEEITEFDPLTGKKVASLNSVRVYANSHYVTPGPTLKQAGEAIKHELSER
LKELIAEGKLLEAQRLEQRTNFDLEMIAATGSCAGIENYSRFLTGRLPGEPPPTLFEYLP
ENAVLFVDESHQTVPQIGAMARGDHRRKITLAEYGFRLPSCIDNRPLRFNEWDAMRPQTV
SVSATPGNWEMEQTGGVFAEQVIRPTGLIDPPVEIRPVEEQVQDLIQECKATTAKGYRTL
VTTLTKRMSEDLTEYMHEAGIKVRYMHSDVETLERIELIRDLRLGVYDVLIGINLLREGL
DIPECGLVAILDADKEGFLRSETSLIQTIGRAARNVDGRVILYADRITGSMERAMNETQR
RREKQEAYNAEHGITPTTIRRNIGDIIAHVSQGDQVTVPIDEDRPHMVGHNLRAYIEDLE
KQMRKAAADLEFETAGRLRDEIRQLENEELGLPVHEQKAPIMGRSNEGKPGTRKTRYGKS
KKFASGRKV
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atggccatccagattcgcaccaccctcgacgagccggaaaccggccagagcttcatcccc
caccgcccggcgcgccccgacaaggtggagggcggccgcccgttcaagctggtcagcgaa
tatcagccgtccggcgaccagccgaccgcaatcgccgagctgaccgcgaccgcgcgcgcg
ggtgagaaggaccaggtgctgctcggcgtcaccggctcgggcaagaccttcaccatggcc
aaggtgatcgaggaattgcagcggccggcgctgatcctcgcccccaacaagattttggcg
gcgcagctctacggcgagttcaaaagcttcttccccgaaaacgccgtcgaatatttcgtc
agctattacgattattatcaacccgaggcgtacgtgccgcggtcggatacgtatatcgaa
aaggaatcgtcgaccaacgagtcgatcgaccgcatgcgccattcggcgacgcgctcgctg
ctcgaacgcgacgacgtcatcatcgtcgcctcggtctcgtgcctctacggcatcggctcg
gtcgaaacctattcggcgatgatcttcgacctgaaaaaaggcacgacggtcgatcagcgc
gagatcgtgcgcaagctcgtggcgttgcagtacaagcgcaacgacgccgccttccagcgc
ggcaacttccgcgtgaagggcgacacgctcgaaatcttcccgtcgcattatgaagacagc
gcgtggcggatcagcttcttcggcgatgacatcgaagagatcaccgaattcgatccgttg
accggcaagaaggtcgcgtcgctcaacagcgtgcgcgtctacgcgaacagccactatgtc
acccccggcccgacgctgaagcaggccggcgaggcgatcaagcacgagctgtccgaacgc
ctcaaggagctgatcgcggaagggaaactgctcgaagcccagcgcctcgaacagcgcacc
aatttcgacctcgagatgatcgcggcgaccggcagctgcgccggcatcgaaaattacagc
cgcttcctcaccggtcgcctgcccggcgaaccgccccccaccctgttcgaatatctcccc
gaaaacgccgtgctgttcgtcgacgaaagccaccagaccgtgccgcagatcggcgcgatg
gcgcgcggcgaccatcgacggaaaatcacgctcgccgaatatggcttccgcctgccctcg
tgcatcgacaatcgcccgctacggttcaacgaatgggacgcgatgcgtccgcagacggtc
agcgtttcggcgacgccgggcaattgggagatggagcagaccggcggcgtcttcgccgaa
caggtcatccgcccgaccggcctgatcgacccgcccgtggaaatccgcccggtcgaggaa
caggtgcaggacctgatccaggagtgcaaggcgaccaccgccaagggctatcgcacgctg
gtgacgacgctcacgaagcggatgtccgaggacctcaccgaatatatgcacgaagcgggg
atcaaggtccgctacatgcactccgacgtcgagacgctggagcgtatcgagctgatccgc
gacctgcgcctcggcgtctacgacgtgctgatcggcatcaacctgctgcgcgaaggcctc
gacatccccgaatgcgggctggtcgcgatcctcgacgccgacaaggaaggtttcctgcgc
tccgaaacctcgctgatccagacgatcggccgcgccgcgcgcaacgtcgacggtcgtgtg
atcctctacgccgaccgcatcaccggctcgatggagcgggcgatgaacgagacgcagcgc
cgccgcgagaagcaggaggcgtataacgccgaacacggcatcacgccgacgacgatccgc
cgcaacatcggcgacatcatcgcgcacgtcagccagggcgaccaggtcaccgtccccatc
gacgaagaccgcccccacatggtcggccacaacctgcgcgcctatatcgaggacctcgaa
aagcagatgcgcaaggctgccgccgacctcgaattcgaaaccgccggccgcctccgcgac
gaaatccgccagctcgaaaacgaagaactcggcctgcccgtacacgaacaaaaggccccg
atcatgggccgcagcaacgaaggcaaaccggggacacgcaaaacgcggtacggaaaatcc
aagaaatttgcgagcgggcggaaggtctga
DBGET
integrated database retrieval system
