Sphingomonas sp. NIC1: A7E77_06465
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Entry
A7E77_06465 CDS
T04479
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
snj
Sphingomonas sp. NIC1
Pathway
snj03030
DNA replication
snj03410
Base excision repair
snj03420
Nucleotide excision repair
snj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
snj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
A7E77_06465
03410 Base excision repair
A7E77_06465
03420 Nucleotide excision repair
A7E77_06465
03440 Homologous recombination
A7E77_06465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
snj03032
]
A7E77_06465
03400 DNA repair and recombination proteins [BR:
snj03400
]
A7E77_06465
Enzymes [BR:
snj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
A7E77_06465
DNA replication proteins [BR:
snj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
A7E77_06465
DNA repair and recombination proteins [BR:
snj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
A7E77_06465
NER (nucleotide excision repair)
GGR (global genome repair) factors
A7E77_06465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
HHH_5
HHH
Motif
Other DBs
NCBI-ProteinID:
ANC86562
LinkDB
All DBs
Position
1325195..1327963
Genome browser
AA seq
922 aa
AA seq
DB search
MPHLYLVDGSGYIFRAYHRLPPLTNRHGEPVGAVYGYTAMLWKLADELHKADGPTHMAVI
LDKSSQTFRNAMYDQYKAHRPPPPEDLVPQFPMIRDATRAFSLPCIEEEGWEADDLIASY
TKAALAQGWQVTIVSSDKDLMQLMTDPSVDMLDTMNNRRLGPDAVVEKFGVGPEKLGDVL
ALMGDSVDNVPGVPGVGPKTAAKLILEHGDVEGVLAAAASDAFKKGKLRENLIEHAEAAR
LSRKLVELACDVPLVHPLEELELPASGIPDAPLRAFLEHHGFKTLMNRLGQVADAPVAAP
ADVPFEADPPCDHDGYETVVDAATLDRWVADAQHQGWVAIDTETTGTDATRCDLVGVSLA
LGANKACYIPLGHGTTDLLAESPVQIDRAEALARLKTLCEDASVLKIGHNLKFDMIVLGL
VGITVAPHDDTIVMSFDLDAGLHGHGMDELAATHLSHSCIAYKDVVGTGKSQRGFHEIDL
KSATRYAAEDADVTYRLWKRFKARLPAEEATRIYEMVDRPLVPVIARMETRGIKVDREKL
SALSAGFSEQIAALETVIHGLAGAPFTIGSPKQLGDVLFERMGIKGGRKGKSGVYSTDVN
ELERIAADKDSPGAEIAARVLDWRQLTKLKNTYTDALQNEINPRTGRVHTSYSLTGAQTG
RLSSTEPNLQNIPIRTEVGRQIRDAFVAEPGNVILAADYSQIELRLAAHMADVPALKAAF
ANGDDIHSLTAMELFGEVNRDTRGRAKTINFAILYGISRWGLAGRLDVTADEAQAMIDRY
FDRFPGINNYIAETTQSVRERGYTTTLFGRKTHFPRIRSKVQHERQGAERAAINAPIQGT
SADIIKRAMVRMEPALLAAGLPNVQMLLQVHDELVFELPEGDVEAAKPVIERVMAEAAAP
AVELSVPLGIEIGVGASWGAAH
NT seq
2769 nt
NT seq
+upstream
nt +downstream
nt
atgccccatctctatctcgtcgacggctcgggctatatcttccgcgcctaccaccgcctg
ccgccgctcaccaaccggcacggcgagccggtcggcgccgtctatggctataccgctatg
ctgtggaagctcgccgacgagctgcacaaagcggacggcccaacgcacatggcggtcatc
ctcgacaaatcgtcgcagaccttccgcaacgcgatgtacgatcagtacaaggcgcaccgt
ccgccaccgccggaagatctggtcccgcaattcccgatgatccgcgacgccacccgcgcc
ttctcgctgccctgcatcgaagaggaaggctgggaggcggacgatctgatcgcgagctac
accaaggccgcgctggcgcagggctggcaggtgacgatcgtcagctccgacaaggacctg
atgcagctgatgaccgatccgtcggtcgacatgctcgacacgatgaacaaccgccgcctc
ggccccgatgcggtggtggagaagttcggcgtcggcccggaaaagctcggcgacgtgctc
gcactgatgggcgacagcgtcgacaacgtgcccggcgtccccggcgtcggcccgaagacc
gccgccaagctgatcctggaacatggcgatgtcgagggcgtgctcgccgcggcggcgtcc
gacgcgttcaagaagggcaagctgcgcgagaatctgatcgagcatgccgaggcggcgcgc
ctcagccgcaagctggtcgaactggcctgcgatgtgccgctggttcacccgctcgaggaa
ttggaactgcccgcaagcggcattcccgacgcgcccctgcgcgctttcctggagcatcac
ggcttcaagacgctgatgaaccggctgggtcaggttgccgacgcccccgtcgcggcgccc
gcggatgtgccgttcgaggccgatccaccctgcgaccacgatggatacgagacggtggtc
gatgccgcgacgctcgaccgctgggtggcggacgcgcagcatcagggctgggtcgcgatc
gataccgagacgaccggcaccgacgcgacgcgctgcgatctggtcggtgtgtcgcttgcc
ttgggcgccaacaaggcgtgctacataccgttgggccacggcacgaccgatctgctcgcc
gaatcgccggtgcagatcgaccgggccgaggcgctcgcgcggctgaagacgctgtgtgag
gacgcatcggtcctcaagatcgggcacaatctgaagttcgacatgatcgtgctcggcctt
gtcggcatcaccgtcgcaccgcacgacgacacgatcgtgatgagcttcgacctcgacgcc
gggttgcacggccacggcatggacgagctcgccgcgacgcatctgtcgcacagctgcatc
gcctataaggacgtggtcggcacggggaaatcgcagcgcggcttccacgagatcgatcta
aaatccgcgactcgctacgccgccgaggacgccgacgtcacctatcgcctgtggaaacgc
ttcaaagcacggctgcccgccgaagaggcgacgcgcatctacgagatggtagaccgcccg
ctggtgcccgtgatcgcacgcatggaaacgcgcgggatcaaggtcgatcgcgagaaattg
tcggcgctgtcggccgggttcagcgagcagatcgccgcgctcgaaacggtgatccacggc
ctcgccggggcgccgttcacgatcggtagccccaagcagctgggcgacgtcttgttcgag
cgcatgggcatcaagggcggccgcaagggcaagtccggcgtctattcgaccgacgtcaac
gagttggagcggattgccgccgacaaggattcgccgggtgccgagatcgccgcgcgcgtg
ctcgactggcgccagctgaccaagctgaagaacacctataccgacgcgctgcagaatgag
atcaacccgcgcaccggccgcgtccacaccagctacagcctgacgggcgcgcaaaccggc
cgcctgtcctcgaccgagccgaacctgcaaaacatcccgatccgcaccgaggtgggtcgc
cagattcgcgacgccttcgtcgcggaaccgggcaacgtcatcctggcggccgactattcg
cagatcgaattgcggctggcggcgcatatggcggacgtcccggcgctgaaggccgccttc
gccaatggcgatgacatccacagcctcaccgcgatggagctgttcggcgaggtcaaccgc
gacacgcgcggacgggcgaagacgatcaacttcgcgatcctctacggcatcagccgctgg
gggctggcggggcggctcgacgtcaccgccgacgaggcgcaggcgatgatcgaccgctat
ttcgatcgcttccccggcatcaacaattacatcgccgaaacgacgcagagcgtgcgcgag
cgcggctatacgacgacgctattcgggcggaagacgcacttcccgcgcatccgtagcaag
gtgcagcacgaacgccagggcgccgaacgcgccgcgatcaacgcgccgatccagggcacc
agcgccgacatcatcaagcgcgcgatggtgcggatggagcccgccctgctcgcggcgggg
ctgccgaacgtgcagatgctgctgcaggtccacgacgaactggtgttcgagttgccggag
ggtgatgtcgaggcggccaagccggtgatcgagcgcgtcatggcggaggctgccgcaccg
gcggtggagctgtcggtgccgctgggaatcgagatcggcgtcggcgcgagctggggagcg
gcgcattga
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