Sphingomonas sp. NIC1: A7E77_08425
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Entry
A7E77_08425 CDS
T04479
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
snj
Sphingomonas sp. NIC1
Pathway
snj02020
Two-component system
snj02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
snj00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
A7E77_08425
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
A7E77_08425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
snj03021
]
A7E77_08425
Transcription machinery [BR:
snj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
A7E77_08425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
Sigma70_r4
Arg_repressor
Motif
Other DBs
NCBI-ProteinID:
ANC86912
LinkDB
All DBs
Position
complement(1748257..1749735)
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AA seq
492 aa
AA seq
DB search
MSLAPRLDIRQSQSLVMTPQLQQAIKLLALSNLEIEGFIAEEIEKNPLLEAAQTEEVVRP
ERIERDEPAGADDLVTGAAKADPLDVDYATESHQQDSVADGGGGFDGALGLNGGSGGGGI
GGEDGIDFDSFAEGDKSLADHLLAQAGAVIDGPDWFIAQHLIDQIDEAGYLTVPLLDIAN
RLGTALARVERVLAQIQTLDPTGVGARDLAECIALQAKEADRYDPCMARLIDNLDLLARG
ELTRLKRMCGVDDEDMADMIRELRSYDPKPGCRYGGEPAPAVTPDLFVMKTKAGWGIELN
AATLPRVLVNRRYYHELSHGPQDKSAKAWLSDALASANWLIKALDQRQRTIIKVATEIVK
QQEAFFLQGVAHLKPMTLAKVAEAIEMHESTVSRVTSNKYLSCARGVFELKYFFTSAIQA
ADGGDAVSAEAVKSAIRALIAAEGAKILSDDTLVELLQAKGFDIARRTVAKYREAMGIGS
SVQRRRARALGG
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgagtctcgccccgcgcctcgacatccgccagtcgcaatcgctggtgatgacgccgcag
ctgcagcaggcgatcaagctgctcgcgctgtccaacctcgaaatcgaaggcttcatcgcc
gaagagatcgagaagaacccgctgctcgaagccgcacagaccgaagaggtcgtccgcccc
gaacgcatcgagcgggacgaacccgccggcgccgacgatctcgtcaccggtgccgccaag
gccgatccgctcgacgtcgattacgccaccgaaagccaccagcaggacagcgtcgccgac
ggcggcggcggcttcgacggggcattgggcctcaacggcggatcgggcggcggcggcatc
ggcggcgaagacggcatcgacttcgattcgttcgcggaaggcgacaagagcctcgccgac
catttgctcgcccaggccggtgcggtcatcgacggccccgactggttcatcgcccagcat
ctgatcgatcagatcgacgaagcgggctacctcaccgtccccctgctcgacatcgccaat
cgcctcggcaccgcgctcgctcgcgtcgaacgcgtccttgcgcaaatccagacgctcgac
cccaccggcgtcggcgcgcgcgacctcgccgagtgcatcgcgctccaggcgaaggaggcg
gaccgctacgatccctgcatggcgcggctgatcgacaatctcgatctgctcgcgcgaggc
gagctcacccgcctcaagcgcatgtgcggcgtcgacgacgaggacatggcggacatgatc
cgcgagctgcgcagctacgatcccaagcccggctgccgctacggcggcgaacccgcgccc
gccgtcacccccgacctgttcgtgatgaagaccaaggcgggctggggcatcgaactcaac
gccgcgacgctgccgcgcgtcctcgtcaaccgccgctattatcacgaactcagccacggc
ccgcaggacaagagcgccaaggcctggctgtccgacgcgctcgcctccgccaactggctc
atcaaggcgctggaccagcgccagcgcacgatcatcaaggtcgcgacggagatcgtgaag
caacaggaagccttcttcctgcaaggcgtcgcgcacctcaagccgatgacgctcgccaag
gtcgccgaagcgatcgaaatgcacgaatcgaccgtcagccgcgtgacgagcaacaaatat
ctgagctgcgcgcgcggcgtcttcgagctgaaatacttcttcaccagcgcgatccaggcc
gccgacggcggtgacgcggtatcggccgaagcggtcaaaagcgcgatccgcgcgctcatt
gccgctgagggcgccaagatcctgtccgacgacacgctcgtcgaactgctccaggccaaa
ggcttcgacatcgcccgccgcaccgtcgccaaataccgcgaagcgatgggcatcggcagc
tcagtacaacgccgccgcgcgcgggcgttggggggatga
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