Sphingomonas sp. NIC1: A7E77_10430
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Entry
A7E77_10430 CDS
T04479
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
snj
Sphingomonas sp. NIC1
Pathway
snj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
snj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A7E77_10430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snj03019
]
A7E77_10430
Enzymes [BR:
snj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
A7E77_10430
Messenger RNA biogenesis [BR:
snj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A7E77_10430
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ANC87277
LinkDB
All DBs
Position
complement(2187678..2189033)
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AA seq
451 aa
AA seq
DB search
MSFAHLGLAEPLVRALEAKGYATPTPIQAQSIPILLEGNDLLGIAQTGTGKTAAFVLPSI
QRLVAAQKRVLPTHVRMLVLAPTRELASQIADNARGYGQFSKLSVATVFGGTSINKNRQD
LSRGVDILVATPGRLIDLVEQGMCNLSMIEILVLDEADQMMDLGFIHALKKIVRMIPRKR
QTLFFSATMPTAIRDLAGQFLTNPKTVSVVPESTTAERVDQYVTFVNQTEKQALLTLVLQ
DPAIDRALVFTRTKHGADRVVKLLAGNGIAANAIHGNKSQGQRERALGEFKDGKTKVLVA
TDIAARGIDVSGVSHVVNFELPNVAEQYVHRIGRTARAGNSGIAIAFCADDERPYLKDIE
KITRQKVTVRPLPDNFTGLANEIKATRVKAIGADPAPRADLPRGQRQPARPRATHAPTAT
RNYANASRRGGGGGRGRSGGGGRGQGAGAAR
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgtcattcgctcatctcggccttgccgagccgctcgtccgtgcgctcgaggccaagggc
tatgccaccccgacgccgatccaggcgcagtcaatcccgatcctgctggaaggcaatgat
ctgctcggtatcgcgcagaccggcaccggcaagaccgcggcgttcgtgctgccgtcgatc
cagcgcctggtcgccgcgcagaagcgcgtgctgccgacgcatgtccgcatgctcgtcctc
gctccgacgcgcgaactcgccagccagatcgccgacaatgcgcgcggctatgggcagttt
tccaagctcagcgtcgcgaccgtgttcggcggcaccagcatcaacaagaatcgccaggac
ctgagccgcggcgtcgacatcctcgtcgcgacgccgggccgcctgatcgacctggtcgag
cagggcatgtgcaacctgtcgatgatcgagattctggtgctcgacgaagccgatcagatg
atggatctgggcttcatccacgcgctcaagaagatcgtgcggatgatcccgcgcaagcgc
cagacactgttcttctcggcgacgatgccgaccgcgatccgcgatctcgccggtcagttc
ctcaccaacccgaagaccgtgtcggtggtgccggaatcgaccaccgccgagcgcgtcgat
cagtatgtcaccttcgtcaaccagacggagaagcaggcgctgctgacgctcgtgctgcag
gacccggcgatcgatcgcgcgctcgtcttcacgcgcaccaagcatggcgccgaccgtgtc
gtgaagctgctcgccggcaacggcatcgccgcgaacgcgatccacggcaacaagagccag
ggccagcgcgagcgggccttgggtgagttcaaggacggcaagaccaaggtgctggtcgcg
accgacatcgccgcacgcggcatcgacgtgtcgggcgtcagccatgtcgtcaacttcgag
ctgccaaacgtcgcggaacagtatgtccaccgcatcggccgcaccgcacgcgcgggcaac
agcggcatcgccatcgccttctgcgccgatgacgagcggccgtatctgaaggacatcgag
aagatcacgcgtcagaaggtgaccgtgcgtccgctgccggacaatttcaccggcctcgcc
aacgagatcaaggcgacgcgcgtcaaggcgatcggtgcggaccccgcgccgcgcgccgac
ctgccgcgcggccagcgccagccggcccgcccgcgcgcaacgcatgcgccgaccgcgacg
cgcaattacgccaacgccagccgtcgtggcggcggtggcggccgcggccgttcgggcggc
ggcggccgtggacagggtgccggcgcggcgcgctga
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