Sphingomonas sp. NIC1: A7E77_13285
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Entry
A7E77_13285 CDS
T04479
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
snj
Sphingomonas sp. NIC1
Pathway
snj03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
snj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
A7E77_13285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
snj03400
]
A7E77_13285
Enzymes [BR:
snj01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
A7E77_13285
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
A7E77_13285
DNA repair and recombination proteins [BR:
snj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
A7E77_13285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
ANC87786
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Position
2811042..2811857
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AA seq
271 aa
AA seq
DB search
MPELPEVETTVRGLTPVLAGQRLTHVEPRRADLRKAIPVNLRQRLTGAMVTALGRRAKYG
LIDTDRGDTLIFHLGMSGRWRVDPAERLAHDHLLIETGEGRSLALNDARRFGFLDLWETA
AIDAYPPFAAMGPEPLGEGFTGAYLHDVLQGRAAPIKAMLLDQRIVAGLGNIYVCEALHL
ARISPTRPAGQISAKRLEALAVAVRDVLLAAIEAGGSTLRDYVRPDGELGYFSKQFLVYG
REGEPCACGGTVQRRVDSGRSTFYCPKCQKH
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
gtgccagagcttcccgaagtcgaaaccaccgttcgcgggctgacccccgtgctcgccggc
cagcgcctgacccatgtcgaaccacgccgtgccgatctgcgcaaggcgatccccgtaaac
ctgcgccagcggctgacgggcgcgatggtgacggcgctggggcggcgggccaaatacggg
ctgatcgataccgatcgcggcgatacgctgatcttccacctcggcatgtcggggcgctgg
cgcgtcgatccggccgagcgactcgcgcacgaccacctgctgatcgagacgggggagggg
cgcagcctggcgctcaacgatgcgcggcgattcggcttcctcgatctgtgggagacggcg
gcgatcgacgcgtatccgccctttgcggcgatggggccggagccgctgggggagggcttt
accggcgcgtatctgcacgacgtgttgcagggtcgcgcggcgccgatcaaggcgatgctg
ctcgaccagcggatcgtggcgggcctcggcaacatctatgtgtgcgaagcgctgcacctg
gcgcggatatcgccgacgcggccggcggggcagatctcagcgaagcgactcgaggcgctg
gcggtggcggtacgcgacgtgttgctcgcggcgatcgaggccggcggatcgacgctgcgc
gactatgtccggccggatggcgagctggggtatttctccaagcaattcctggtctatggc
cgcgagggggaaccgtgcgcatgcggcgggacggtgcagcgccgggtggatagtgggcgg
tcgacgttttattgtccgaagtgtcagaaacactga
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