Sphingomonas sp. NIC1: A7E77_14055
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Entry
A7E77_14055 CDS
T04479
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
snj
Sphingomonas sp. NIC1
Pathway
snj03030
DNA replication
snj03430
Mismatch repair
snj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
snj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
A7E77_14055
03430 Mismatch repair
A7E77_14055
03440 Homologous recombination
A7E77_14055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
snj03032
]
A7E77_14055
03400 DNA repair and recombination proteins [BR:
snj03400
]
A7E77_14055
Enzymes [BR:
snj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
A7E77_14055
DNA replication proteins [BR:
snj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
A7E77_14055
DNA repair and recombination proteins [BR:
snj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
A7E77_14055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
COE1_HLH
DUF655
MCM10_OB
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
ANC87917
LinkDB
All DBs
Position
2984798..2988304
Genome browser
AA seq
1168 aa
AA seq
DB search
MAHSGFVPLRIFSSYTMLDGAIDPKAIAKQAKAQKFPAAGLTDRNGLYAAMAFSDAAKKD
GVQPVIGTMLCVARPDMPDGVAAPLDWIALYAQDTTGYDNLCALVSMAHLDRPIELPAHV
DFAALEGRTDGLIALTAGAEGGLARLFHEDQPDRARAYCDRLQALFPDRLYIELVRRGDA
VEEAAEQALIDLAYDRDLPLVATNPCCFSDSGFLDAHDAMLCIAHSTYVESEDRVRSCPD
AWLKPAEVMKQLFADLPEAIDNTLVVAQRCAVMAPYRKPILPSLAGDRDGEAAMLRDQAA
AGLEARLDRIEELGAQPDDPNWRDAYRERLAFEVNVIVQMGFPGYFLIVGDFIKWAKDHD
IPVGPGRGSGAGSVVAWALTITDLDPMKLGLLFERFLNPERVSMPDFDIDFCETRRGEVI
RYVQEKYGRDQVAQIITFGKLKARAVLKDTGRVLQMSYGQVDRLAKLVPNHPTDPWDLKR
ALNGVPELAKEYANDNQVRRLLDLATKLEGLPRHSSTHAAGVVIGDRPLSQLVPLYRDPR
SDMPVTQFDMKYVEGAGLVKFDFLGLKTLSVLKKAVQLLNKRGISIDLDALPWDDEATYK
LLQKGDTVGVFQLESEGMRRTLSAVRPTNFGDIIALVSLYRPGPMDNIPSFGRRKQGTEE
ILYPHPLLEPILKETYGIFVYQEQVMQAAQILAGYSLGGADLLRRAMGKKIKAEMDAQRA
TFVAGCAEHNGIKADYANQLFDLIDKFAGYGFNKSHAAAYALLAYQTAWLKAHHPHEFFA
ASMCYDMAQTDKLCIFVDDMRRLGVDIVGPDINQSDAEFDVQTVGEGEERRLAVRYALGA
LKSVGEGAMEKLIVERVAAGPFKSLDDLANRVDPRLINKRQLETLAAAGAFDAIEPNRAA
VHAVAETILGLAASTHAGRTSGQGGLFGGDEVAGDTIRLPQGLRWTMAQAMEQEKDAFGF
YFSAHPVDRHAHLAKMHGARQYVALTELRIPEDGTRAGATMAVLVEDARWRTSARGKRYM
MATLSDASGQFVATCFDDGVAAELEEAARCGGCGLITVELDRRPGEETPRVSVKRIQPFE
GLASMARFTIEARVATAEAFAALATLLGEARGARGEVRARIPAGDGEVVVLLGRDFLLDL
ELVEAIQAIPGISNVALDRVASQLRAVG
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atggctcattcgggtttcgtgccgcttcgcattttttcgtcctacacgatgctcgacggg
gcgatcgatccgaaggcgatcgccaagcaggccaaggcgcagaagtttcccgcggccggc
ctgaccgatcgcaatgggctatacgcggcgatggccttttcggacgcggcgaagaaggac
ggcgtgcagccggtgatcgggacgatgctgtgcgtcgcacggccggatatgcccgacggc
gtcgccgcgccgctcgactggatcgcgctctatgcgcaggatacgacgggctacgacaat
ctgtgcgcgctggtcagcatggcgcatctcgaccgaccgatcgaattgccggcgcatgtc
gatttcgctgcgctggaagggcgaaccgatggcctaatcgcgctcaccgcgggggccgaa
ggcggcttggcgcgcctgttccacgaggatcagcctgaccgcgcgcgcgcctattgcgac
cgattgcaggcgctgttccccgaccggctgtacatcgaactcgtccgccggggcgacgcg
gtggaggaagcggccgagcaggcgctgatcgaccttgcctatgatcgcgacctgccgctg
gtcgcgaccaatccgtgctgcttttccgacagcggctttctcgacgcgcacgatgccatg
ctgtgcatcgcgcattcgacctatgtcgaaagcgaggatcgcgtccgttcgtgccccgat
gcgtggctgaaacccgccgaggtgatgaagcagctgttcgccgatctgcccgaggcgatc
gacaacacgctggtcgttgcgcagcggtgcgcggtgatggcgccctatcgcaagccgatc
ctgcccagcctggcgggcgatcgcgatggcgaggcggcaatgctgcgcgatcaggcggca
gcaggactggaagcgcggctcgaccggatcgaggaactgggtgcgcagcccgacgatccc
aattggcgcgatgcgtatcgcgagcggctggcgttcgaggtgaacgtcatcgtccagatg
ggttttcccggatacttcctgatcgtcggcgacttcatcaaatgggcgaaggatcacgac
attccggtggggccgggtcgtggctcgggcgcgggctcggtcgttgcctgggcgctgacg
atcaccgacctcgacccgatgaagctgggcctgctgttcgagcgattcctgaacccggaa
cgcgtgtcgatgcccgacttcgacatcgacttttgcgaaacccggcgtggcgaggtcatc
cgctacgtgcaggagaaatacggccgcgatcaggtcgcgcagatcatcaccttcggtaag
ctgaaggcgcgcgcggtgttgaaggacaccggccgcgtgctccagatgagctatgggcag
gtcgaccggctcgccaagctggtgcccaatcacccgaccgatccgtgggacctgaagcgc
gcgctgaacggcgtgcccgagttagcgaaggaatatgccaacgacaatcaggtccgccgc
ctgctcgacctcgcaaccaagctggagggcctgccgcgccattcgtcgacgcacgccgcg
ggcgtggtcatcggcgaccggccgctgagccagctcgtcccgctctatcgcgatccgcgg
tccgacatgccggtgacgcagttcgacatgaaatatgtcgagggcgcggggctggtgaag
ttcgacttcctcggcctgaagacgctgtcggttctgaagaaggccgtacaactgctgaac
aagcggggcatttcgatcgacctggatgcgctgccctgggacgacgaggcgacgtacaaa
ctgctccagaagggcgacacggtcggcgtgttccagctggaatcggagggcatgcgccgc
acgctcagcgccgtccgcccgaccaatttcggcgacatcattgcgctcgtgtcgctgtat
cgccccggcccgatggacaacattccctcgttcggccggcgcaagcaggggaccgaggag
atcctctacccccacccgctgctggaaccgatcctgaaggagacctacgggatcttcgtc
tatcaggaacaggtgatgcaggccgcgcagatcctggcgggctacagcctgggcggcgct
gatctgctgcgccgcgcgatgggcaagaagatcaaggcggagatggacgcgcagcgcgcg
accttcgtcgccggttgcgccgagcataacggcatcaaggcggactacgccaaccagctg
ttcgacttgatcgacaagttcgcgggctatggcttcaacaagagccatgccgcggcctac
gccctgctcgcctatcagaccgcgtggctgaaggcgcaccacccgcacgaattcttcgcc
gcgtcgatgtgttacgacatggcgcagaccgacaagctctgcatcttcgtcgacgacatg
cgacggctgggcgtcgatatcgtcgggccggacatcaaccagagcgatgccgagtttgac
gtgcagacggtcggggagggcgaggaacgccgcctcgcggttcgctatgcattgggcgcg
ctgaagtccgtcggcgaaggcgcgatggagaaactgatcgtcgagcgggtcgcggccggg
ccgttcaagagtctcgacgaccttgccaatcgcgtcgatccgcgcctgatcaacaagcgg
cagctcgaaacgctggccgcggcgggggcgttcgacgcgatcgagccgaatcgcgccgcg
gtgcatgccgtcgccgagacgattctgggcctcgccgcctcgacgcatgcggggcggacg
agcggtcagggtggcctgttcggtggggatgaggtggccggcgacacgatccggctgccg
caggggctgcgctggacgatggcgcaggcgatggagcaggaaaaggacgccttcggcttc
tatttctccgcgcatcccgtcgaccggcacgcgcatctcgcgaagatgcatggcgcgcgg
caatatgtcgcgctgaccgagttgcgcattccggaggacggcacgcgcgcgggggcgacg
atggcggtgctggtggaggatgcgcgctggcgcacctcggcccgcggcaaacggtacatg
atggcgacgctgtcggatgcgagcggccagttcgtcgcgacatgcttcgacgatggcgtc
gcggcggaactggaagaggcagcgcgctgtggcgggtgcggcctgatcacggtcgaactc
gatcggcggccgggcgaggaaacgccgcgcgtctcggtcaagcgcatccagccgttcgag
gggctggcgtcgatggcgcgcttcacgatcgaggcgcgggtggcgacggcggaggccttc
gcggcgttggcgaccttgctgggtgaggcgcgcggtgcgcgcggcgaagtgcgcgcgcgc
attccggcaggtgatggcgaggtggtcgtcctgctcgggcgcgatttcctgctcgacctc
gaactggtcgaggcgatccaggcaattccggggatcagcaacgtagcgctcgaccgggtc
gcttcgcagttgcgggcggtgggctga
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