Sphingomonas sp. NIC1: A7E77_14375
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Entry
A7E77_14375 CDS
T04479
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
snj
Sphingomonas sp. NIC1
Pathway
snj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
snj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A7E77_14375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
snj03400
]
A7E77_14375
Enzymes [BR:
snj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A7E77_14375
DNA repair and recombination proteins [BR:
snj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
A7E77_14375
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
UB2H
Cas3-like_C_2
SNF2-rel_dom
SecA_DEAD
AAA_16
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ANC88473
LinkDB
All DBs
Position
complement(3053473..3056943)
Genome browser
AA seq
1156 aa
AA seq
DB search
MPDLKTILTAKTPLTLSGVPAGFQPSLLADLARAAKGRAVFIAPDDAAMRAVAATAPFFA
PELEVIVFPAWDCLPYDRASPTLRIMAERIAALYRLQRPAKGPQLVLTTANAATQRVLTP
FRIRQLVATLEPGARIDRDDLAKLLQANGYVRTETVHDQGEYAVRGGIVDLYPSGEEQAL
RLDFFGDEIETVRTFSPEDQRTTGRIDGFTLLPASEALLDEESIKRFRTRYRDKFGATAT
GDPLYQAISDGRRLAGMEHWLPLFEDKLATLFDHLSADDVIVRDFGVPGAVEGRMEAIAD
YYENRQRAEAAQPGSYRPLAAKTLYLDAKEWAAGLEACHAHLTTPFHEPESASVLDFGVD
GARDFAPERSGGANVYEAVVKHLGALRKQGKKPVLASYSIGARERLGNLLKDHGLNGAKA
ADSWHEALGIADTSKSAGVALVVLPLDHGFTAPDVAVLTEQDMLGDRLVRRAKRKKSADA
FLAELATLTPGDLVVHADHGIGKYLGLTSIPVGQSPHDCVAVEYAGGDKLFVPVENLEVL
SRYGSSEEGASLDRLGGEAWQRRKSKMKERIREIAGELIKTAAERALHPGDVLEPDPAGY
PSFVDRFPYAETDDQDRAIEDVLGDLGAGRPMDRLIVGDVGFGKTEIALRAAFVAAMAGK
QVAVVCPTTLLARQHFNNFSARFEGFPMNIGRLSRLVPAAEAKRVKEGLADGSIDVVIGT
HALLAKAIDFKRLGLVIVDEEQRFGVTHKERLKALRADVHMLTLTATPIPRTLQMAMSGI
RELSVIQTPPVDRLAVRTYVIPWDPVVLREALLREHYRGGQSFIVTPRVADLPDLEEYLR
NEVPEVRYVIAHGQMSATEVEERMSAFYDKKFEVLVSTTIIESGIDIASANTMIVNRADR
FGLAQLYQLRGRVGRSKTRAYAYLVTPPERMMTDTAEKRLKVLSDLDSLGAGFQLASHDL
DIRGAGNLLGDEQSGHIKEVGYELYQSMLEEAIMDAKAGGLKSDRLRDFSPQITVDAPIL
IPDDYVPDLDLRMGLYRRLNELEDNREIEAFAAEMIDRFGPLPDATENLIKVIEIKLNAR
KACIAKMDVGPRGVLVGFHDDTPPNVAGLLAYVERLNGVAKLRPDSKLVLQRAWPDAKSR
LHGALQLSKGLAKAAG
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgcccgacctcaaaacgatcctgaccgccaagacgccgctgacgctgtcgggcgtgccc
gccgggttccagccgtcgctgctcgccgacctcgcccgcgcggcgaaggggcgtgcggtg
ttcatcgcgccggacgatgccgcgatgcgcgcggtggcggcgacggcgccgttcttcgcg
cccgagctggaggtgatcgtcttcccggcctgggactgcctgccctatgatcgcgcctcg
ccgacgctgcggatcatggcggagcggatcgcggcgctctaccggttgcagcgcccggcc
aagggtccgcaactcgtcctgacgaccgccaatgcggcgacgcagcgcgtgctgacgccg
ttccggatacgccagctggtggcgacgctggaaccgggcgcgcggatcgatcgcgacgat
ctggccaagctgctccaggcgaacggctatgtccgcaccgaaaccgtccacgaccagggc
gaatatgccgtgcgcggcggcatcgtcgatctgtatccgagcggggaagagcaggccttg
cgcctcgacttcttcggcgacgagatcgagacggtgcgcacgttcagccccgaggatcag
cgcaccaccgggcgcatcgacggcttcacgctgctgcctgcgtccgaggcgttgcttgac
gaggaatcgatcaagcgcttccgtacgcgctatcgcgacaagttcggcgcgaccgcgacc
ggcgatccgctgtatcaggcgatcagcgacggacggcgccttgccggcatggagcattgg
ctgccgctgttcgaggacaaattggcgacgctgttcgaccatctgtccgccgacgatgtg
atcgtgcgcgacttcggcgtgcccggcgcggtcgagggccggatggaggcgatcgccgat
tattacgaaaaccgccagcgcgccgaggctgcgcagcccggcagctatcggccgctcgcc
gccaagaccctgtacctcgacgccaaggaatgggccgcggggctggaggcatgccacgcg
cacctgaccacgcccttccacgaacccgaaagcgcgagtgtgctcgatttcggcgtcgac
ggcgcgcgcgatttcgcgcccgagcggtcgggcggtgcgaacgtctacgaagccgtcgtc
aagcaccttggcgcgttgcgcaagcagggcaagaagccggtcctcgccagctattcgatc
ggcgcgcgcgagcggctgggcaatctgctgaaggatcacggcctcaacggcgccaaggcg
gcggacagctggcatgaggcgctgggcatcgccgatacgtcgaagagtgccggtgtcgcg
ctggtcgtgctaccgctcgaccacggcttcaccgcccccgacgtcgcggtactgaccgag
caggacatgctcggcgaccggctggtgcggcgggcgaagcgcaagaagtcggcggacgcc
ttccttgccgaattggcgacgctgacgccgggcgacctcgtcgtccatgccgatcatggc
atcggcaaatatctggggctgacctcgatccccgtcggccagtcgccgcatgattgcgtc
gcggtcgaatatgccggtggcgacaaattgttcgtgccggtcgagaatctcgaggtcctg
tcgcgctacggcagtagcgaagagggcgcgagcctggaccgactgggtggcgaggcgtgg
cagcggcgcaagtcgaagatgaaggagcgcatccgcgagatcgcgggtgagcttatcaag
accgccgccgaacgcgcgctgcatccgggtgacgtgctggagcccgatcccgccggttat
ccgagcttcgtcgatcgcttcccctatgccgaaacggacgatcaggatcgcgcgatcgag
gatgtgctgggcgacctcggcgccggccgtccgatggaccggctgatcgtcggcgacgtc
gggttcgggaagaccgagatcgcgctacgcgccgccttcgtcgcggcgatggcgggcaag
caggtcgcggtcgtctgcccgacgacgttgctcgcgcgccagcatttcaacaatttcagc
gcgcggttcgaaggctttccgatgaacatcggtcgcctcagccgcctcgtgcccgcggcc
gaggcgaagcgggtcaaggaggggctggcagacggcagcatcgacgtcgtcatcggcacg
catgcgctgctggcaaaggcgatcgatttcaagcgcctgggcctcgtcatcgtcgacgag
gaacagcgcttcggcgtcacgcacaaggagcggctgaaggcgctgcgggcggacgtgcat
atgctcaccctcaccgcaacgccgatcccgcgcacgttgcagatggcgatgagcggcatc
cgcgaactgtcggtcatccagaccccgccggtcgatcgcctcgcggtgcgcacctatgtc
atcccctgggacccggtggtgctacgcgaggctctcttgcgcgaacattatcgcggcggg
cagagcttcatcgtcacgccgcgcgtcgccgacctgcccgacctggaggaatatctccgc
aacgaggtgcccgaggtccgctacgtcatcgcgcatggccagatgagcgcgaccgaggtc
gaggagcggatgagcgctttctacgacaagaagttcgaggtgctcgtctcgaccacgatt
atcgaaagcggcatcgacattgcgtcggcgaacacgatgatcgtcaatcgcgccgaccgc
ttcggcctcgcccagctgtaccagctgcgcggccgtgtcggccggtcgaagacgcgcgcc
tatgcctatctggtgacgccgcccgaacggatgatgaccgacacggcagagaagcggctg
aaggtcctgtccgatctcgacagcctgggcgcagggttccagctcgccagccacgacctc
gacattcgcggcgcgggcaatctgctcggcgacgaacaatcggggcatatcaaggaagtt
ggctacgaactctaccaatccatgttggaagaggcgatcatggacgccaaggccggcggg
ctgaagagcgaccgtctgcgcgacttctcgccgcaaattaccgtcgacgcgccgatcctg
atccccgacgattacgtgcccgaccttgaccttcggatgggcctgtaccgccgcctcaac
gagctggaggacaatcgcgagatcgaagcctttgccgccgagatgatcgaccgcttcggt
ccgctgcccgatgcgaccgagaacctcatcaaggtgatcgagatcaagctcaatgcgcgc
aaggcctgcatcgccaagatggatgtggggccgcggggcgtgctggtcggcttccacgac
gatacgccgccgaacgtcgctgggctgctcgcctatgtcgagcggctcaacggcgtcgcc
aagctgcgccccgacagcaagctggtgctgcagcgggcgtggccggacgccaagtcgcgc
ctgcatggggcgttgcaactgtcgaaggggctggcgaaagcggcggggtaa
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