Streptomyces nitrosporeus: CP967_07930
Help
Entry
CP967_07930 CDS
T06889
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
snk
Streptomyces nitrosporeus
Pathway
snk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
snk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CP967_07930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snk03019
]
CP967_07930
Messenger RNA biogenesis [BR:
snk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CP967_07930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
QEU71900
UniProt:
A0A5J6FAD9
LinkDB
All DBs
Position
complement(1865587..1867272)
Genome browser
AA seq
561 aa
AA seq
DB search
MSHPHPELGTPPKLPKGGLRVTPLGGLGEIGRNMTVFEYGGRLLIVDCGVLFPEEEQPGI
DLILPDFTTIRDRLDDVEGIVLTHGHEDHIGGVPYLLRLKPDIPLIGSKLTLALIEAKLQ
EHRIRPYTLEVVEGQRERIGLFDCEFIAVNHSIPDALAVAIRTPAGLAVATGDFKMDQLP
LDGRLTDLHAFARLSEEGIDLLLSDSTNAEVPGFVPPERDISNVLRTVFATAQKRIIVAS
FASHVHRIQQILDAAHEYGRRVAFVGRSMVRNMGIARDLGYLKVPAGLVVDVRTLDDLPD
DEVVLVCTGSQGEPMAALSRMANRDHQIRIVPGDTVILASSLIPGNENAVYRVINGLTRW
GANVVHKGNAKVHVSGHASAGELLYFYNICKPKNLMPVHGEWRHLRANAELGALTGVPKD
HIVIAEDGVVVDLVDGKAKIVGKVQAGYVYVDGLSVGDVTETSLKDRRILGDEGIISVFI
VVDSSSGKIVGGPHIQARGSGIDDGAFTAVVPKVEEALNKSAQDGVMEPHQLQQLVRRTV
GKWVSDTYRRRPMILPVVVEV
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
ttgagtcatccgcaccctgaactcggtaccccgccgaagctcccgaagggcggtctgcgg
gtcaccccgctcggcggcctgggggagatcggccgcaacatgacggtcttcgagtacggc
ggccgcctgctcatcgtcgactgcggcgtgctcttccccgaggaggagcagcccggtatc
gacctgatcctgcccgacttcaccaccatccgggaccgcctggacgacgtcgagggcatc
gtcctcacgcacggccacgaggaccacatcggtggtgtcccctatctgctccggctgaag
ccggacatcccgctcatcggctccaagctcaccctcgcgctcatcgaggcgaagctccag
gagcaccggatccgtccctacaccctggaggtggtggaggggcagcgggagcgcatcggc
ctcttcgactgcgagttcatcgcggtcaaccactccatcccggacgcgctggcggtcgcc
atccgcaccccggccggcctggcggtggccaccggcgacttcaagatggaccagctcccg
ctggacggccgcctcaccgacctgcacgccttcgcgcggctgagcgaggagggcatcgac
ctgctgctctccgattcgaccaacgccgaggtcccgggcttcgtcccgccggagcgggac
atctccaacgtgctgcgcacggtcttcgcgaccgcccagaagcgcatcatcgtggccagc
ttcgccagccacgtccaccgcatccagcagatcctggacgccgcccacgagtacgggcgc
agggtcgccttcgtggggcgctccatggtccggaacatgggcatcgcccgtgacctgggc
tatctgaaggtccccgccggtctcgtcgtggacgtcaggacgctggacgacctgccggac
gacgaagtggtgctggtctgcacgggttcccagggcgagccgatggcggccctctcccgg
atggccaaccgggaccaccagatccggatcgtgccgggtgacacggtgatcctggcgtcg
tccctgatcccgggcaacgagaacgcggtctaccgcgtgatcaacggcctgacgcgctgg
ggcgccaacgtcgtccacaagggcaacgcgaaggtccacgtctcgggccacgcctcggcc
ggcgagctgctgtacttctacaacatctgcaagccgaagaacctgatgccggtacacggc
gaatggcgccacctgcgggccaacgccgagctcggcgcgctgaccggagtgccgaaggac
cacatcgtcatcgcggaggacggcgtggtcgtcgacctcgtcgacggcaaggcgaagatc
gtcggcaaggtccaggccggttatgtgtacgtcgacggcctctcggtcggcgacgtcacg
gagacctccctcaaggaccgccgcatcctcggcgacgaggggatcatctcggtcttcatc
gtggtcgacagctcctccggcaagatcgtgggcggcccgcacatccaggcccgcggctcg
ggcatcgacgacggcgcgttcaccgctgtcgtgcccaaggtcgaggaggctctcaacaag
tcggcgcaggacggggtgatggagccgcaccagctccagcagctggtccgccgcacggtg
ggcaagtgggtctccgacacctaccgccggcgcccgatgatccttccggtggtcgtcgag
gtctga
DBGET
integrated database retrieval system