Streptomyces nitrosporeus: CP967_26125
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Entry
CP967_26125 CDS
T06889
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
snk
Streptomyces nitrosporeus
Brite
KEGG Orthology (KO) [BR:
snk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snk03019
]
CP967_26125
Enzymes [BR:
snk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CP967_26125
Messenger RNA biogenesis [BR:
snk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CP967_26125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
AAA_19
AAA_22
AAA_25
AAA_30
ResIII
NTPase_1
AAA_11
nSTAND3
HA2_N
AAA
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
QEU75000
UniProt:
A0A5J6FJ93
LinkDB
All DBs
Position
complement(5910767..5913364)
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AA seq
865 aa
AA seq
DB search
MIRSDALDQLPVRTALPALRRALDEHGAAVLCAPPGTGKTTLVPLVLAGLTGDGPVRRVV
VAEPRRIAARAAARRMAWLLGERAGGRVGFTVRGERLVGPDTVVEVVTTGVLLQRLQRDQ
ELSGTDVVIIDECHERHLDADTVAAFLLDVRATLRPGLRLVAASATTDAEGWARLLGDAP
VVEARGVSYPVETVWAPPSSATRPPHGTRVDPVFLAHVAAVVRRALAERDGDVLCFLPGV
GEAGRVAGLLAGVDAEVLQVHGRAPAGVQDAVLAGPVRGRRVVLSTSVAESSLTVPGVRV
VVDSGLAREPRVDHARGLSALTTVRASRATGRQRAGRAGREAPGAVYRCWDEAEDGRLAA
FPSPEIKVADLAAFALQAACWGDPDASGLALLDPPPAGAMGAAREVLTAVGAVDAAGRAT
PRGVRMSRLGLHPRLGRALLDGAEEVGGRRAAEVVALLGEEPPREYGDDLAAALRTARRG
GDAYAARWRQEVRRLSSALEGARGGGRGGAGAPSGPGARGGGGLSGAGGPGAAPGDGPGG
TDDAAAGTVAALAFPERVARARGEGAFLMASGTGAGLREGSPLRRAPWLAVAVADRPAHS
ASARVRLAAVVDEDTALSAADRLRFAGEEVRWADGDVVARAVERLGAIELSVRPLRDPDP
ALVRGALLEGLGREGTGLLGWSRDARALRARLGFLHRVLGAPWPDVSDGALLSRAQEWLE
PELSRARRRADLARIDAGQAVRRLLPWATGEAGRLDELAPERIEVPSGSRIRVEYGGEQP
VLAVKLQELFGLGETPRVAGVPVLVHLLSPAGRPAAVTADLASFWREGYRAVRAELRGRY
PRHPWPEDPASVKATRSTSARSRRE
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
gtgatccgcagcgacgccctggaccagttgcccgtacgcaccgccctgcccgctctgcgg
cgggcgctcgacgaacacggggcggcggtgctctgcgcgcctcccgggacggggaagacg
accctggtgccgctggtcctcgccgggctgaccggtgacgggccggtgcgccgggtcgtg
gtcgccgagccgcgccggatcgccgcgcgggcggccgcgcggcggatggcgtggctgctc
ggggagcgggccggcgggcgggtcggcttcacggtgcgcggggagcgcctggtgggcccg
gacacggtggtggaggtggtgaccaccggggtgctgctccagcggctccagcgcgaccag
gagctgtccgggaccgatgtggtgatcatcgacgagtgccatgagcggcacctggacgcg
gacaccgtcgcggcgttcctcctcgacgtacgcgcgacgctcaggcccggcctgcggctg
gtcgccgcgtcggcgaccacggacgcggagggctgggcccggctgctgggtgacgcgccg
gtcgtcgaggcccggggggtgtcgtacccggtggagacggtgtgggcgccgccgtcctcg
gcgacgcgcccgccgcacgggacgcgggtggatccggtgttcctggcgcatgtggcggcg
gtggtgcgccgggcgctcgcggagcgggacggcgacgtgctgtgcttcctgccgggcgtc
ggggaggccggccgggtggcggggctgctcgccggggtggacgccgaggtgctccaggtg
cacgggcgggccccggccggtgtccaggacgcggtgctggccgggccggtgcgggggcgc
cgggtggtgctgtcgacgtcggtggcggagtcgtccctgacggtgccgggggtgcgggtc
gtcgtggactcggggctggcccgggagccccgggtggatcacgcccgcgggctgagcgcg
ctcacgacggtgcgggcctcgcgggccacgggccgtcagcgggccggccgggcggggcgt
gaggcgccgggcgcggtgtaccgctgctgggacgaggcggaggacgggcggctcgccgcg
ttcccgtcgccggagatcaaggtggccgatctggcggcgttcgcgctccaggcggcgtgc
tggggtgatccggacgcctcgggtctcgccctgctggatccgccgccggccggggcgatg
ggggcggcgcgggaggtgctgacggcggtcggcgcggtggacgcggcgggccgggcgacg
ccccggggcgtacgcatgtcccggctgggcctgcacccccgcctgggccgggccctgctc
gacggggcggaggaggtgggcgggcgccgggcggcggaggtggtggccctgctgggcgag
gagccgccgcgggagtacggcgacgacctggcggccgccctgcggacggcgcggcggggc
ggtgacgcctacgcggcgcgctggcggcaggaggtacggcggctgtcctcggcgctggaa
ggcgcccggggcggtggccggggcggcgcgggggcgccgtccggtccgggggcgcggggc
ggaggcggcctgtccggggcgggcgggccgggggcggcccccggtgacgggcccgggggc
acggacgacgcggcggccgggacggtggccgcgctggcgttccccgagcgggtggcgcgg
gccaggggtgagggggcgttcctgatggcgtccggtaccggcgccgggctgcgggagggt
tcgccgctgcgccgggctccctggctggccgtcgcggtggccgaccggccggcgcactcc
gcgtcggcccgggtgaggctcgcggccgtggtggacgaggacaccgccctgtcggccgcg
gaccggctgcggttcgcgggcgaggaggtccgctgggcggacggcgatgtggtggcccgc
gccgtggagcggctcggcgccatcgagctgtcggtacgtccgctgcgcgatccggacccc
gccctggtgcgcggcgcgctgctggagggcctgggccgggaggggacgggactgctgggc
tggagccgggacgcccgggcgctgcgggcccggctggggttcctgcaccgggtgctgggg
gcgccgtggccggatgtgtcggacggtgcactgctgtcgcgggcgcaggagtggctggag
ccggagctgtcgcgggcgcggcggcgggcggatctggcgcggatcgacgcggggcaggcg
gtgcggcggctgctgccgtgggcgacgggtgaggcggggcggctggacgagctggccccg
gagcggatcgaggtgccgagcggttcgcggatccgggtggagtacggcggtgaacagccc
gtactggcggtgaagttgcaggagctgttcgggctgggggagacaccgcgggtggcgggg
gtgcccgtcctcgtgcacctgctgtcccccgccgggcgtccggccgcggtgacggcggac
ctggcgtcgttctggcgggagggctaccgggcggtgcgggcggagctgcgggggcgctac
cccaggcatccctggccggaggacccggcgtcggtgaaggcgacacgttccacttcggcg
cggtcgcgccgggagtga
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