Staphylococcus nepalensis: BJD96_04390
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Entry
BJD96_04390 CDS
T05272
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
snl
Staphylococcus nepalensis
Pathway
snl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
snl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BJD96_04390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snl03019
]
BJD96_04390
03009 Ribosome biogenesis [BR:
snl03009
]
BJD96_04390
Enzymes [BR:
snl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BJD96_04390
Messenger RNA biogenesis [BR:
snl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BJD96_04390
Ribosome biogenesis [BR:
snl03009
]
Prokaryotic type
rRNA helicases
BJD96_04390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
Helicase_RecD
CMS1
Flavi_DEAD
UBA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ATH59627
UniProt:
A0A291JJQ6
LinkDB
All DBs
Position
969562..971067
Genome browser
AA seq
501 aa
AA seq
DB search
MQNFKELGISDKTVETLQSMGFDEATPIQKESIPLALEGKDVLGQAQTGTGKTGAFGIPL
IEKVANREGVQSLILAPTRELAMQVAESLRAFANGQNVQVVTVFGGMPIDRQIKSLKKGP
QIVVGTPGRVIDHLNRRTLKTNDIHTLILDEADEMMNMGFIDDMKFIMDKIPAEQRQTML
FSATMPKAIQTLVQQFMKSPVIVKTMNNEMSDPQIDEYYTIVKELEKFDTFTNFLDVHQP
ELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQLDILVATDVA
ARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKKGVAITFVNPIEMDYIRQIEQANK
RQMTALRPPHRKEVLKARENDIKGKVQKWMSRENEPRLQRIATELIEEYNDVDLVASLLQ
ELVESNDEVDVQLTFEKPLSRKGRQSKGPRRGGNNHKRGNKFDNKNRRSKGGFNNKKKND
RSADRNNKKSMKGRTFADHKK
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
ttgcaaaattttaaagaattagggatctcagataaaacggtagaaaccctacaatctatg
gggttcgatgaagccactcctatacaaaaagagagtatccctcttgccttagaaggtaag
gatgttcttggtcaagcgcaaacaggtacaggaaaaacaggcgcatttggtattccactt
attgaaaaagtggcgaatcgagaaggggttcaatcattaatcctagcaccaacaagagag
ttagctatgcaagtagctgaatcgcttagagcttttgctaatggacaaaatgtgcaagta
gtaactgtatttggtggtatgccaatagatcgccaaatcaaatcacttaaaaaaggtccc
caaatcgttgtaggaacacctggacgtgtaattgatcatttaaaccgtcgcacattaaaa
acaaatgatattcatacgcttatattagacgaagcggatgaaatgatgaatatgggcttt
attgatgacatgaaatttatcatggataaaatcccagctgaacaacgtcaaacaatgcta
ttttcagctacaatgcctaaagcaattcaaactttagttcaacaatttatgaaatcacca
gtcattgttaaaacaatgaataatgagatgtcagatccacaaattgatgaatattataca
attgtgaaagaacttgagaaatttgatacctttacaaacttcttagatgtacatcaacca
gaattagccattgtatttggtcgtacgaaacgtcgtgttgatgaattaacaagtgcatta
atttcaaaaggctataaagctgaaggtttacacggtgacattacacaagctaaacgttta
gaagtattaaagaaatttaaaaacgaccaattagatatattagttgcaactgatgttgca
gcaagaggacttgatatctctggcgtgagtcacgtttataactttgatatccctcaagat
acggaaagctatacgcatagaattggacgtacaggtcgtgctggtaaaaaaggtgtagcg
attacttttgttaacccaatcgaaatggattatatcagacaaatcgaacaagctaacaaa
cgacaaatgacagcattaagaccccctcatcgtaaagaagtgcttaaagcacgtgaaaat
gatattaaaggtaaggttcaaaaatggatgtctagagagaacgaacctagattacaacgt
attgctacagaattaattgaagaatataatgatgtagatttagttgcatctttactacaa
gagcttgtagaatcaaatgatgaagttgatgttcaacttacatttgaaaaaccattatct
cgtaaaggtcgccaaagtaaaggccctagacgtggtggcaacaaccacaaacgtggaaat
aaatttgacaacaaaaaccgtcgttcaaaaggcggattcaacaataaaaagaaaaatgat
agatcagcagatagaaataacaagaaatcaatgaaaggtcgcacattcgcagaccacaaa
aaataa
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