Staphylococcus nepalensis: BJD96_05880
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Entry
BJD96_05880 CDS
T05272
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
snl
Staphylococcus nepalensis
Pathway
snl03030
DNA replication
snl03430
Mismatch repair
snl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
snl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BJD96_05880
03430 Mismatch repair
BJD96_05880
03440 Homologous recombination
BJD96_05880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
snl03032
]
BJD96_05880
03400 DNA repair and recombination proteins [BR:
snl03400
]
BJD96_05880
Enzymes [BR:
snl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BJD96_05880
DNA replication proteins [BR:
snl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
BJD96_05880
DNA repair and recombination proteins [BR:
snl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
BJD96_05880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
HHH_6
PHP
tRNA_anti-codon
DUF2686
Motif
Other DBs
NCBI-ProteinID:
ATH59859
UniProt:
A0A291JJD9
LinkDB
All DBs
Position
1254798..1258001
Genome browser
AA seq
1067 aa
AA seq
DB search
MVAHLNIHTSYDLLNSSIKIKDCITKAAKEGYTSLAITDTNVLYGYPQFYDACIAANIHP
IFGMTTYVTDGLVSVETIILAKNNQGLKDLFKLSSAIKMKEKSETSFEWLKKYNDNFVVI
FKNVVEEHQSLLQTFSNDDEVFLNHTSQKLFDLPVVWAQSTSYLNQEDGDTLTALAAIRD
NSKLDLVKEEHEYNAHLFSLNELDTLDLSDEVWQNTNYIETICKAELQYHQSLLPKFKTP
DNQSSKDYLYQTLQQNLKKLNLSSEIKQGYNKRLVHEYDIITRMGFEDYFLIVSDLIHYA
KTNGVFVGPGRGSSAGSLVSYLLDITTIDPIKYNLLFERFLNPERVTMPDIDIDFEDTHR
EKVIRYVQEKYGDNHVAGIVTFGHLLARAVSRDVGRIMGFDEITLNEISSLIPHKLGITL
DETYERNDFKQFVHRNHRHERWFEICKKLEGLPRHTSTHAAGIIINDHPLYEYTPLTIGD
AGLLTQWTMTEAERIGLLKIDFLGLRNLSIIHQIVKQVKKDLRIDIDIEAIPFDDKKVFQ
LLSQGNTTGIFQLESDGIRNVLKKLQPQHFEDIVAVTSLYRPGPMEEIPTYIARRHAPEK
VQYLHKDLEPILKTTYGVIIYQEQIMQIASKFANFSYGEADILRRAMSKKNRAVLESERQ
HFVDGALKNGYETSLSKQIFDLILKFADYGFARAHAVSYSKIAYIMGYLKVHYPNYFYAN
ILSNSIGSEKKTAQIIDEAKHQQLKVLAPNINESHWFYKANKKGIYLSLGAIKGVGYQSV
KLIVDERKENGIYKDFFDFTRRIPKRIKSRKLLEALILVGAFDSFGKNRATLLHSIDQVL
DDVSDVEQDGFIFDVLTPKISYEEKEELPDKVLSDYEKEYLGFYVSTHPVEKAFEQKQYL
GIYKLNNARDNQPIFVQIDQLKRIRTKNGQNMAFITLNDGINNLDGVVFPDAYKKYESIL
NTEDTLIVKGKFENRNNKKQLIINQMEDVPTFEDYKLTHAEQIIIRNLEDFTEIEQWLEE
QETTGDIPVTYFQENQNQFKNIGFISREKEKIKMLISKFSPWDIRII
NT seq
3204 nt
NT seq
+upstream
nt +downstream
nt
atggttgcgcatttaaatattcatacatcgtatgatttgttgaattctagcattaagata
aaagattgtatcacaaaagcggcaaaagaaggctacacttcattagcaattacagacacc
aacgttttatatggctatcctcagttttatgatgcatgtatagcagcaaatatccatcct
atattcggcatgactacttatgtgacagatggtttggtctcagtagaaacaatcatcctt
gcgaaaaacaatcaaggtttaaaagatttatttaaattatcatctgcaatcaaaatgaaa
gaaaaatcagaaacatcgtttgaatggttgaaaaaatataatgataattttgttgtaata
tttaaaaatgtagtagaggaacaccaaagtttactacaaactttttcgaatgatgatgaa
gtatttctaaatcacacgagtcaaaaactatttgatttaccggttgtttgggcacaaagt
acgagttatttaaaccaagaagatggcgatactttaactgctttagcagctattagagat
aattcgaaattagatttagttaaagaagaacacgaatataacgcacatttgtttagtctg
aatgaattggacacattagatttaagtgacgaagtttggcaaaataccaactacattgaa
acgatttgtaaagccgaattgcaatatcatcagtcattattacctaagtttaaaacacca
gacaatcaatcatccaaagattatctatatcaaacattgcaacaaaatttaaaaaaatta
aatttatcttctgaaattaaacaaggctacaataaaaggctcgtacatgaatatgatatt
attacgcgcatggggtttgaagattactttcttattgtgagtgacttaatacactacgca
aaaacaaatggtgtatttgtggggcctggccggggttcatcagcgggttcacttgtcagt
tatttattagatattacaaccattgaccccatcaaatataacttattattcgagcgtttt
ttaaacccagaacgcgtcacgatgcctgatattgatatagattttgaagatacgcataga
gagaaagtgattcgctatgtacaagaaaaatatggtgataaccatgtagctggaattgtg
acatttggacatttattagctagagcagtttcgagagatgttggtcgaattatggggttt
gacgaaattacattaaacgaaatttcatctttaattcctcataaacttggtattacgtta
gatgaaacttatgaacgcaacgactttaaacagtttgtccatagaaatcaccgtcatgaa
cgttggtttgaaatttgtaaaaaattagaaggcttaccacgtcatacctcaacacatgca
gcaggtattatcattaatgatcatccgttatatgagtacacaccattaacaataggtgac
gctggattattaacacagtggacaatgacagaagctgaacgtatcggtctgttgaaaatt
gattttttaggtttgagaaatttatctattatccatcaaattgttaaacaagttaagaaa
gatttgcgtattgatatagatatagaagccattccatttgatgataaaaaagtatttcaa
ctcctttctcaaggtaatacaacaggaatatttcaattagaatcggatggtatcagaaat
gtattgaaaaaattacagccacagcactttgaagatattgtagctgtaacgtcgttgtat
agaccaggtcctatggaagaaatcccaacctatattgcgagaaggcacgctccagagaaa
gtacagtatctccataaagatttagaacctattttaaaaacgacgtacggcgtcattatc
tatcaagaacaaatcatgcaaatcgcaagtaagtttgctaatttcagctatggagaagcc
gatatattaagacgtgcgatgagtaaaaaaaaccgcgcagtgttagaaagcgaacgacag
cattttgttgatggcgcattgaaaaatggttacgagactagtttaagcaaacaaatattt
gatttgattttaaagtttgctgattacggatttgcacgtgcgcatgctgttagttattca
aaaattgcttatattatggggtatttaaaggtacattatccgaattacttttatgcaaat
atattaagcaattcaattggtagtgagaagaagacggcacaaattattgatgaagctaaa
catcaacaactcaaggtattggcaccgaacatcaatgaaagccattggttttacaaagct
aataagaagggtatttatttatctttaggtgcaattaagggtgttggatatcaaagtgtc
aaactcattgttgatgagcgaaaagaaaatggtatatataaagacttttttgattttaca
cgtcgcataccaaaaagaatcaagtctagaaaattacttgaagcattaattttagttggt
gcctttgattcctttggaaaaaaccgtgctactttattacactctatagaccaagtgctt
gatgacgtctctgacgtggaacaagatggttttatttttgacgtgttaacgcctaaaatt
tcatacgaagaaaaagaagaattgccggataaagtgctaagtgattatgaaaaagaatat
ttagggttttatgtatcaacccatccagtagaaaaagcattcgaacaaaagcaatatctc
ggcatatataaattaaataatgcacgagataatcaacctatatttgttcaaattgatcag
ttaaaacgcattcgtactaaaaatggtcaaaacatggcgtttataactttgaacgatggt
atcaataatctagatggcgtcgtatttcctgatgcttataaaaaatatgaatcaatttta
aatacagaagatacattgatagtaaagggtaaatttgaaaacagaaataataaaaaacaa
cttataatcaatcaaatggaagatgtaccaacatttgaagattataagttaacacatgcc
gaacaaattataattagaaatttagaagattttactgaaatagaacaatggttggaagaa
caagaaaccacaggtgatattcctgtgacgtattttcaagaaaatcaaaatcaatttaaa
aacatcggttttatctctcgtgaaaaagagaaaatcaaaatgcttatttctaaattctca
ccgtgggatataaggataatttag
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