Staphylococcus nepalensis: BJD96_06190
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Entry
BJD96_06190 CDS
T05272
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
snl
Staphylococcus nepalensis
Pathway
snl03410
Base excision repair
snl03430
Mismatch repair
snl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
snl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BJD96_06190
03430 Mismatch repair
BJD96_06190
03440 Homologous recombination
BJD96_06190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
snl03400
]
BJD96_06190
DNA repair and recombination proteins [BR:
snl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
BJD96_06190
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
BJD96_06190
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BJD96_06190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ssDNA-exonuc_C
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
ATH59917
LinkDB
All DBs
Position
1326912..1329188
Genome browser
AA seq
758 aa
AA seq
DB search
MIKSKYNWDVKLPEVEITEDVSTDLKLTPIVKKILESKGITEETAIRELLNGTQIAHDPW
TMSDMHKAVERINLAIDQNQKILVYGDYDADGVTSTTILVSTLKALGAHVGWYIPNRFSE
GYGPNEMAFKNAYEEGISLIITVDNGIQGHDEIQMIQELGVDVIVTDHHEIGRTMPNAYA
IVHPMHPGFDYPFKYLCGAGVAYKLAQCLLTEPPTHFLGLVAIGTIADLVSLTDENRSLV
QRGLDVLNQHCPLSIKAILKQAGCNDEINEETVGFVIGPRLNAVGRLEDAALAVELLMTE
TEEEAEFLAEQVEFFNQERKDIVSQITEEALVMAEQQVQDGSKFLLLAQPDWHEGVLGIV
ASKIVETYSLPTLILNIDQAQNHAKGSARSIDQVSMFEILSAHSELISKFGGHHMAAGVT
MPIENIQDLQHGLNGWMAQLAETTSLEPRKKVDVKILESDITIKNIKDIHRLRPFGTDFS
SPCFELQDIIVQQAKGIGQDKNHLKLVLGDSQLQAIFWQNGYLVKELGVQQPINLIGTLQ
INEWNGFQSPQFMVADLASNNLQILDYRSKRKVSELNADAEDVAYLIHKKSEKLGENYYY
YGEDIINKYDKYVFRDLPTSITELKTTLKTVDVSQIYLVLNHERSIYFEGMPKMETFKQC
FKALASKKETNLAKEGMQLSQFLNIQPSMLKFILKVFLDLEFIKDENGIIMLNSVSTKRD
IATSKYYQNRLDRIEVEKLLLYEDFNRLKQWFKAELVE
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atgattaaatcaaaatataattgggacgttaaattacctgaagttgaaattacagaagat
gtttcaacagatttaaagctaactcctattgtaaaaaaaattctggaaagtaaagggata
acagaagaaactgcaattcgtgaacttttaaacggtacacaaattgcgcacgatccgtgg
acaatgagtgatatgcataaggctgtggagcgtattaatctagctatagatcaaaaccaa
aaaattttagtatatggtgattacgatgctgatggtgtcacttctacaacaatattagtt
tctacacttaaagcacttggagcgcatgtaggttggtatattccaaaccgtttttctgaa
ggctatggacctaacgagatggcctttaaaaacgcttatgaggaaggcatttcactaatt
ataacagtagacaatggcattcaaggccatgatgaaatccaaatgattcaagaattaggt
gtagatgtaattgttacagatcatcatgagattggtcgtacaatgcctaacgcatatgca
attgtacatccaatgcatcctgggtttgattatccttttaaatatttgtgcggtgctggc
gtggcgtataaattggcacagtgtttattgactgaaccaccaacccattttcttggttta
gtagctattggaacgattgcagatttagtatcattaacggatgaaaatcgttcacttgtt
caacgcggtttagacgtgttaaatcaacactgtccattatcaataaaagcgattttaaaa
caagcaggttgcaatgatgaaatcaatgaagaaactgttggttttgttatcggcccgcgt
ttaaacgcagtaggtcgtttagaagatgctgcactagctgtcgagttattaatgacagaa
actgaagaagaagcggaatttttagctgaacaagttgaattttttaaccaagaacgtaaa
gatatcgtctcacaaattaccgaagaagcattagtaatggcagagcaacaggtgcaagat
ggttctaagttcttattgttagcacaaccggactggcatgaaggcgtactcggaattgta
gcttcaaaaattgtagaaacatacagtcttcctacattaattttaaacattgatcaagcg
caaaaccatgcgaagggctcagctcgtagtattgaccaagtttcgatgtttgaaatttta
agtgcacattcagagttaatttctaaatttggcggtcatcatatggcagcgggtgttacg
atgccaatcgaaaatatacaagatctacaacatggtttaaacggttggatggctcaatta
gcagaaacgacttctttagaaccgcggaaaaaagtggatgtaaaaatattagaaagtgat
attacaataaaaaatattaaagatattcataggctccgtccatttggaacagatttttcc
agcccttgttttgaattacaagatattattgttcaacaagcaaaaggtattggtcaagac
aaaaatcatttaaaacttgtattaggggatagtcaattacaggctattttttggcaaaat
ggctatttagttaaagaactaggtgtacaacagccgattaatttaataggtactttacaa
attaatgaatggaatggatttcaatctccacaatttatggttgcagatttagcgagtaat
aatttgcagatattggattatagaagtaaacgtaaagtgagcgagttaaatgctgatgct
gaagacgttgcttatttaattcataaaaaaagtgaaaaattaggtgagaattattactat
tatggtgaggacattattaataaatatgataaatatgtatttagagatttacctacatca
atcactgaattaaaaactactttaaaaacagttgacgtatctcaaatttatcttgtgcta
aatcatgaacgttctatatattttgaaggtatgccaaaaatggagacgtttaaacaatgt
tttaaagcactagcgtctaagaaagaaacaaatttagctaaggaaggtatgcaattaagc
cagtttcttaatattcaaccgagtatgcttaaatttatcttaaaagttttcttagattta
gagtttattaaagatgaaaatggtataataatgctaaacagtgtttcgacaaaacgtgac
attgcaacaagtaaatattatcaaaatcgtcttgataggatagaagttgaaaagttattg
ctttatgaagattttaatcgcttgaagcaatggtttaaggctgaattggtagaataa
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