Staphylococcus nepalensis: BJD96_08220
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Entry
BJD96_08220 CDS
T05272
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
snl
Staphylococcus nepalensis
Pathway
snl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
snl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BJD96_08220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snl03019
]
BJD96_08220
Messenger RNA biogenesis [BR:
snl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BJD96_08220
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_PNO1_2nd
KH_KhpA-B
KH_NusA_2nd
Motif
Other DBs
NCBI-ProteinID:
ATH61369
LinkDB
All DBs
Position
complement(1739517..1741049)
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AA seq
510 aa
AA seq
DB search
MLGIILGVVVGYVVARKVLHQKQLQARQTAEDIIEQGNKEAENVKKEKLLEAKEENQILK
EQSENELRERRGDLQKQEARLLQKEENLERKSDLLDKKDEILEQKESKLEERQQQVDAKE
SSVQSLINKHEQELERISGLSQEEAANEQLQRVEEELSHDIAILVKEKEKEAKETVDKNA
KELLATTVQRLAAEHTSESTVSVVNLPNDEMKGRIIGREGRNIRTLETLTGIDLIIDDTP
EAVILSGFDPIRREIARTALVNLVSDGRIHPGRIEDMVEKARKEVDDIIRDAGEQATFEI
NVHNMHPDLVKILGRLQYRTSYGQNVLKHSIEVAHLSGMLAAELGEDVTLAKRAGLLHDV
GKAIDHEVEGSHVEIGVELAKKYAENDTVINAIHSHHGDVEPTSIISILVAAADALSAAR
PGARKETLENYIRRLERLETLSESYEGVEKAFAIQAGREIRVIVSPDTIDDLKSHRLARD
IKSQIEDELQYPGHIKVTVVRETRAIEYAK
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
ttgctaggtattattctcggagttgttgtagggtacgttgttgcccgaaaagtattgcat
caaaagcaattacaagcaagacaaactgcagaagatattatcgaacaaggtaataaagaa
gcagagaatgttaagaaggaaaagctccttgaagctaaagaagagaatcaaatcttaaaa
gaacaaagtgaaaatgagcttcgtgaaagacgtggtgatcttcaaaagcaagaagcacga
cttcttcaaaaagaagaaaacttagagcgaaaatctgatctactagataaaaaagatgag
attttagagcaaaaagagtctaaacttgaagaacgacaacaacaagtagatgcaaaagag
agtagtgttcagtcattaataaataagcatgaacaagagttagaacgcatctctggtctc
tctcaagaagaagccgctaatgagcaacttcaaagagttgaggaagaattgtcacatgat
attgcaatacttgttaaggaaaaagagaaagaagcaaaagaaacagtcgataaaaatgca
aaagaactattagcaactactgttcaaagattagctgcagaacatacttcagaatctaca
gtatctgttgttaatttaccaaatgacgaaatgaaaggtcgaatcattggtagagaagga
agaaacattagaacgctagaaacgttaactggtattgatttaatcatagacgatacacca
gaagcagtcattctctcaggttttgacccaattagacgcgaaattgcaagaactgcatta
gtaaatcttgtttcagatggacgtatccatcctggaagaattgaagatatggttgaaaaa
gctcgaaaagaagtagacgacattattagagatgctggtgaacaagccacatttgaaatt
aacgtacacaacatgcatccagatttagttaaaatcttaggtcgcttacaatatcgtaca
agctatggacaaaatgtactgaaacattctatagaagttgctcacttaagtggtatgtta
gcagctgaattaggagaagatgttacattagctaaacgtgctggtttacttcatgacgtt
ggtaaagctatcgatcatgaagttgaaggaagccatgttgaaattggtgtagaattagct
aaaaaatatgctgaaaatgatacagtcattaatgctatacattctcaccatggagatgta
gaaccaacttctattatttctatcttggtcgctgcggcagatgcattgtcggctgcaaga
ccaggtgctcgtaaagaaacattagagaattatattagaagattagaaagactagaaaca
ctttctgaaagctatgaaggtgttgaaaaagcgttcgcaatccaagcaggtagagaaatt
cgagttattgtatcgcctgatactatcgacgacttaaagtcacatcgcttagcaagagat
attaagagccaaattgaagatgaacttcaatatcctggacatataaaagtgacagttgtt
cgtgagactagagcaattgaatacgcaaaataa
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