Sphaerotilus sulfidivorans: EWH46_00905
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Entry
EWH46_00905 CDS
T06182
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
snn
Sphaerotilus sulfidivorans
Pathway
snn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
snn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EWH46_00905 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
snn03021
]
EWH46_00905 (rpoC)
03400 DNA repair and recombination proteins [BR:
snn03400
]
EWH46_00905 (rpoC)
Enzymes [BR:
snn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EWH46_00905 (rpoC)
Transcription machinery [BR:
snn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EWH46_00905 (rpoC)
DNA repair and recombination proteins [BR:
snn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EWH46_00905 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QEM99468
UniProt:
A0A5C1PXS8
LinkDB
All DBs
Position
143123..147343
Genome browser
AA seq
1406 aa
AA seq
DB search
MKGLLDLFKQFTPDEHFDAIRIGLASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIDLAAPCAHIWFLKSL
PSRLGLVLDMTLRDIERVLYFEAYVVVDPGMTPLKKFSIMSEDDYDAKRREYGDEFVALM
GAEGIKQLLEEMDLDVEIERLRGDMTGSELKVKKNSKRLKVMEAFKKSGIKPHWMIMEVL
PVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLARLLELKAPEIIVRNEKRMLQEA
VDSLLDNGRRGKAMTGANKRALKSLADMIKGKSGRFRQNLLGKRVDYSGRSVITVGPTLK
LHQCGLPKLMALELFKPFIFSRLEAMGIASTIKQAKKEVESGTPVVWDILEEVIKEHPIM
LNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSIEAQMEARA
LMLASNNVLFPASGEPSIVPSQDVVLGLYYATRERINGKGEGMVFSDVGEVLRALDNGVV
ELTAKINVRLTEYSKDKTTGEWVPETKLVSTTVGRALLSEILPRGLPFSNLNKALKKKEI
SRLINTSFRKCGLKDTVVFADKLLQSGFRLATRAGISIAIDDMLVPKQKYELIEKAENEV
KEIEQQYVSGLVTAGERYNKVVDIWGKTGDEVGKVMMSQLSKQKTIDRHGKEVDQESFNS
IYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARK
GLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTENGLAMRALVEGGEVIESLRDRILG
RVTAVDVLHPETQEVLVTKGTMLDEDAMDVLEAAGADEVKVRTSLTCDTRFGICAKCYGR
DLGRGGLVNQGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSEGIIGFN
STMRYVTNAKGELVVISRSGEIVISDPHGRERERHKVPYGATLNIKADQTIKAGTILGNW
DPLTRPIITEFAGKMRFENVEEGVTVAKQVDEVTGLSTLVVIDPKRRGSAKVVRPQVKLL
DFAGQEVKIPGTDHSVTIGFPIGALIQVRDGQDVMPGEVLARIPVEGQKTRDITGGLPRV
AELFEARSPKDKGILAEITGTVSFGKETKGKVRLQITDPEGRVYEELVPKEKNILVHEGQ
VVNKGESIVDGPADPQDILRLLGVEELARYIVDEVQDVYRLQGVKINDKHIEVIVRQMLR
RVQITNSGDTHYIVGEQVERSELFGTNDEMRRQGKLPATYSDVLLGITKASLSTDSFISA
ASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGLAYHQARKAKDEMDENERRA
IALQEAQEALAAVDAEAAGGEVPPQV
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
atgaagggactgctcgaccttttcaagcaattcacgcccgacgaacacttcgacgcgatc
cgcatcgggctggcctcgcccgagaagatccgctcgtggtcgttcggcgaagtgaagaag
cccgagacgatcaactaccgcaccttcaagccggagcgtgacggcctgttctgcgccaag
atcttcggcccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcctgaagcac
cgcggcgtgatctgcgagaagtgcggcgtcgaagtcacccagaccaaggtccgccgtgac
cgcatgggtcacatcgacctggccgccccctgcgcgcacatctggttcctgaagtcgctt
cccagccgtctgggcctggtgctcgacatgacgctgcgcgacatcgagcgcgtgctgtac
ttcgaagcctacgtggtcgtcgaccccggcatgaccccgctgaagaagttcagcatcatg
agcgaggacgactacgacgcgaagcgccgcgagtacggcgacgagttcgtcgcgctgatg
ggtgccgagggcatcaagcagctgctcgaggagatggacctcgacgtcgagatcgagcgc
ctgcgcggcgacatgaccggctccgagctgaaggtcaagaagaactccaagcgcctgaag
gtgatggaggccttcaagaagtcgggcatcaagccgcactggatgatcatggaggtcctg
ccggtgctgccgccggacctgcgtccgctcgtgcccctggacggtggccgcttcgcgacc
tccgacctgaacgacctgtaccgccgcgtcatcaaccggaacaaccgtctggctcgcctg
ctcgagctgaaggccccggagatcatcgtgcgcaacgaaaagcgcatgctgcaggaagcg
gtcgacagcctgctggacaacggccgtcgcggcaaggcgatgaccggcgcgaacaagcgc
gcgctgaagtccctggccgacatgatcaagggcaagtcgggccgcttccgccagaacctg
ctgggcaagcgcgtcgactactcgggccgttcggtcatcaccgtgggcccgacgctcaag
ctgcaccagtgcggtctgcccaagctgatggcgctggagctgttcaagcccttcatcttc
agccgtctggaagcgatgggcatcgcctccacgatcaagcaggcgaagaaggaagtggaa
tcgggcacgccggtggtctgggacatccttgaggaagtcatcaaggaacacccgatcatg
ctgaaccgggcgccgacgctgcaccgcctgggcatccaggccttcgagccggtgctgatc
gaaggcaaggcgatccagctgcatccgctcgtctgctcggccttcaacgccgacttcgac
ggtgaccagatggccgtgcacgtgccgctgtcgatcgaggcgcagatggaagcgcgcgcc
ctgatgctggcgtcgaacaacgtgctgttcccggcctcgggcgagccgtcgatcgtgccg
tcgcaggacgtggtgctgggtctgtactacgcgacccgcgagcgcatcaacggcaagggc
gaaggcatggtcttctccgatgtcggcgaagtgctgcgcgcgctggacaacggcgtggtc
gagctgaccgccaagatcaacgtccgcctgaccgagtacagcaaggacaagaccaccggc
gaatgggtgcccgagaccaagctggtctcgaccaccgtcggtcgcgccctgctctccgag
atccttccgcgcggcctgccgttcagcaacctgaacaaggccctgaagaagaaggagatc
tcgcgcctgatcaacacctcgttccgcaagtgcggtctgaaggacacggtggtcttcgcg
gacaagctgctgcagagcggcttccgtctggcgacccgcgccggcatctcgatcgccatc
gacgacatgctggtgccgaagcagaagtacgagctgatcgagaaggccgagaacgaggtc
aaggagatcgagcagcagtacgtctccggtctggtgaccgcgggcgagcgctacaacaag
gtcgtcgacatctggggcaagacgggtgacgaggtcggcaaggtcatgatgagtcagctg
tccaagcagaagaccatcgaccgccacggcaaggaagtggaccaggagtcgttcaactcc
atctacatgatggccgactcgggcgcgcggggttccgccgcccagatccgccagctcgcc
ggcatgcgcggcctgatggccaagccggacggctcgatcatcgagacgccgatcaccgcg
aacttccgcgaaggcctgaacgttctgcagtacttcatctccacccacggtgcccgaaag
ggcctggcggacacggcgctgaagaccgcgaactcgggctacctgacccgccgtctggtc
gacgtgacccaggatctggtggtcatcgaggacgactgcggcaccgagaacggcctggcg
atgcgtgcgctggtcgaaggcggtgaggtgatcgaatcgctgcgcgaccgcatcctcggc
cgcgtgaccgccgtcgacgtgctgcaccccgagacccaggaagtcctggtcacgaagggc
accatgctcgacgaggacgcgatggacgtgctcgaggctgccggcgccgacgaagtcaag
gtccgcacctcgctgacctgcgacacccgcttcggcatctgcgccaagtgctacggccgc
gacctcggccgcggcggcctggtcaaccagggcgaggccatcggcgtcatcgcggcgcag
tcgatcggcgagccgggcacccagctgacgatgcggaccttccacatcggtggcgcggcg
tcgcgtgcggcggtcgcctcgagcgtcgaggccaagtccgagggcatcatcggcttcaac
agcacgatgcgctatgtgaccaacgccaagggcgagctggtggtgatctcgcgttcgggc
gaaatcgtcatttccgacccgcacggccgcgagcgcgagcgccacaaggtgccgtacggc
gccacgctgaacatcaaggccgatcagacgatcaaggccggcaccatcctgggcaactgg
gatccgctgacccgtccgatcatcaccgagttcgccggcaagatgcgcttcgagaacgtc
gaggaaggcgtgaccgtggccaagcaggtggacgaggtgaccggtctgtcgacgctggtg
gtcatcgacccgaagcgccgcggctcggccaaggtggtgcgcccgcaggtcaagctgctg
gacttcgccggccaggaagtgaagatccccggcaccgaccactcggtgacgatcggcttc
cccattggcgcgctgatccaggtccgcgacggccaggacgtgatgcccggcgaagtgctg
gcgcgcatcccggtcgaaggccagaagacccgcgacatcaccggcggtctgccgcgtgtg
gccgagctcttcgaagcccgttcgcccaaggacaagggcatcctggccgagatcaccggc
acggtgtccttcggcaaggagaccaagggcaaggtgcgcctgcagatcaccgatccggaa
ggccgcgtctacgaagaactcgtgccgaaggaaaagaacatcctggtgcacgaaggccag
gtggtcaacaagggcgagtcgatcgtcgacggtccggccgatccgcaggacatcctgcgt
ctgctgggcgtcgaggaactggcgcgctacatcgtcgacgaagtgcaggacgtctaccgt
ctgcagggcgtgaagatcaacgacaagcacatcgaggtgatcgttcgccagatgctgcgt
cgcgtgcagatcacgaactcgggcgacacgcactacatcgtcggcgagcaggtcgagcgc
tcggagctgttcggcaccaatgacgagatgcgcaggcagggcaagctgccggcgacctac
tccgacgtgctgctgggcatcacgaaggcgtcgctctccaccgactcgttcatctcggcc
gcttccttccaggaaaccacccgggtgctgaccgaggcggcgatcatgggcaagcgcgac
gagctgcgcggcctgaaggagaacgtcatcgtcggccgcctgatcccggctggtaccggt
ctcgcctaccaccaggcccgcaaggccaaggacgagatggacgagaacgagcgccgtgcg
atcgcgctgcaggaggcgcaggaagcgctggctgcggtcgatgccgaagccgccggtggc
gaggtgccgccgcaggtctga
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