Sphaerotilus sulfidivorans: EWH46_08165
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Entry
EWH46_08165 CDS
T06182
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
snn
Sphaerotilus sulfidivorans
Brite
KEGG Orthology (KO) [BR:
snn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snn03019
]
EWH46_08165 (hrpA)
Enzymes [BR:
snn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
EWH46_08165 (hrpA)
Messenger RNA biogenesis [BR:
snn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
EWH46_08165 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
Helicase_C
OB_NTP_bind
DEAD
HA2_C
AAA_22
WHD_HA2
NACHT
AAA_19
nSTAND3
T2SSE
SRP54
nSTAND_NTPase5
AAA_25
PhoH
AAA_30
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
QEN02600
UniProt:
A0A5C1Q602
LinkDB
All DBs
Position
1786076..1789960
Genome browser
AA seq
1294 aa
AA seq
DB search
MAPNPVPPITYPDSLPVSARRDEIAQAMRDHQVVIVCGETGSGKTTQLPKIALELGRGLG
AGGSGLIGHTQPRRIAASSVAKRIAEELKSPLGEVVGYKVRFQDRLQAGASVKLMTDGIL
LAETQTDPLLKAYDTLIIDEAHERSLNIDFLLGYLRRILPRRPDLKIVVTSATIDAERFA
QHFASRQGPAPVIMVSGRTFPVEQRWKPFEEAKDYDLNDAIADAVDDLWRGAGGGDILIF
LPGEREIREAADHLRKHLSHQPLHRHADILPLFARLSQAEQDRVFETGGAKRIVLATNVA
ETSLTVPGIRYVIDAGTARVKRYSYRNKVEQLQVEPVSQAAANQRAGRCGRVANGICIRL
YDEKDFQSRPRFTDPEILRSSLAGVILRMKSLGLGLVEDFPFIEPPPRKAIADGYALLGE
LGAVDEANELTAIGRELARLPLDPRVGRMILEARSREALHEVLVIASALSVQDVRDRPLE
AQQAADEKHRKFDDERSEFMGYLKLWNWIEEGRGSHGHADAAKAGQKVDTHKLSNRQQEQ
RLRESFVNPRRVREWRDIHSQLHTVVAEHGWRLNGTPATYEQVHQSMLAGLLGNIGCKAD
DDEWYLGARGIKFWRHPGAHLSKKPGRWLIAAELVDTTRLFGRGLAAIEPQWIEPIAGHL
LKKQLLEPHWEKKAGEVVAFERATLYGIVVYNQRRVNFGLVDPVAAREIFIREALVNGEW
ETRLPFLAHNQKMIRQVEELEHKSRRQDVLVDEHLIFAYYDAQLPQEVVSGASFERWYRH
EQKLNPKLLHLTRDELMRHEAAGITTAAFPKTIRLGGIDCTATYLHAPGDAKDGVTVTVP
IYALNQVSEERCDWLVPGMLEAKVLALVKSLHQRPRSRLMPLAEFVAEFVELNPFAQGPL
LETLLKAVRERTQLAVQRNDFKLDMVAPHLFMNFRVVDEHGRQLGTGRNLAALKAELGGQ
ARSAFQALAALKTGSGPTSPAAAVTPAPTAVSAGSRSAKVSPPPPAAPEPLAPQAYTAWT
FGELPELMEIRKAGQTLIGFPALIDRGTQVEIEVFDEPAAAAVKHRAGLRRLLALNLKEP
LKYLEKNIPDLQKMAVAFMPLGTQEELRTQIIDVALERAFLAEPLPHDAASFQARIDEGR
TRLNLIAQEIARQAGTVLLEFAAAQRKLKDARAPREVADDIAAQLQRLMGKRFIATTPWA
QLQHLPRYLKGVQLRLDKLRGDPARDAQRLAELRPLEQRWSRRVAELKGAPDARLDEYRW
LMEELRISFFAQELKTPQPVSTKRLDKVWAQMSM
NT seq
3885 nt
NT seq
+upstream
nt +downstream
nt
gtggcgcccaatccggtgccgccgatcacctatcccgacagcctgccggtcagcgcgcgc
cgcgacgagatcgcgcaggcgatgcgcgatcatcaggtggtcatcgtctgcggcgagacc
ggttcgggcaagacgacgcagctgcccaagatcgcgctcgagctgggccgcggcctgggc
gcgggcggctccggcctgatcggccacacgcagccgcgccgcatcgccgccagttcggtg
gccaagcgcatcgccgaggagctgaagtcgccgctgggcgaggtggtcggctacaaggtg
cgcttccaggaccggctgcaggccggcgcctcggtcaagctgatgaccgacggcatcctg
ctggccgagacgcagaccgatccgctgctgaaggcctacgacacgctgatcatcgacgag
gcgcacgagcgcagcctcaacatcgactttctgcttggctatctgcggagaatcctgccg
cgccggccggacctgaagatcgtcgtcacctcggccaccatcgacgccgagcgcttcgcg
cagcacttcgcctcgcgccaggggccggcgccggtgatcatggtcagcggccgcaccttt
ccggtcgagcagcgctggaagcccttcgaggaggcgaaggactacgacctgaacgacgcg
atcgccgacgcggtcgacgacctctggcgcggcgccggcgggggcgacatcctgatcttc
ctgccgggcgagcgcgagatccgcgaggccgccgaccacctgcgcaagcacctcagccac
cagccgctgcaccgccatgccgacatcctgccgctgttcgcgcggctgtcgcaggccgag
caggaccgcgtcttcgagaccggcggcgctaagcgcatcgtgctggccaccaacgtggcc
gagacgtcgctgacggtgccgggcatccgctatgtgatcgacgccggcaccgcgcgcgtc
aagcgctacagctaccgcaacaaggtcgagcagctgcaggtcgagccggtcagccaggcg
gcggccaaccagcgcgccggccgctgcggccgcgtggccaacggcatctgcatccggctc
tatgacgagaaggacttccagagccgcccgcgcttcaccgacccggaaatcctgcgctcc
tcgctcgccggggtgatcctgcggatgaagtcgctcggcctggggctggtggaggacttt
cccttcatcgagccgccgccgcgcaaggcgattgccgacggctacgcgttgctgggcgag
ctgggcgcggtcgacgaggccaacgagctgaccgccatcggccgggaactcgccaggctg
ccgctcgatccgcgcgtgggccgcatgatcctggaggcgcgcagccgcgaggcgcttcat
gaagtgctggtcatcgccagtgccttgagcgtgcaggacgtgcgcgaccgcccgctggag
gcccagcaggcggccgacgagaagcacaggaaattcgacgacgagcgctccgagttcatg
ggctacctgaagctctggaactggatcgaggagggccgcggcagccacggccacgccgat
gcagccaaggccgggcagaaggtcgacacccacaagctcagcaaccgccagcaggagcag
cgcctgcgcgagagcttcgtcaacccgcgccgggtgcgcgagtggcgcgacatccacagc
cagctccacaccgtggtggccgagcacggctggcgcctgaacggcacgcccgccacctac
gagcaggtgcaccagtcgatgctggcgggcttgttgggcaacatcggctgcaaggccgac
gatgacgagtggtatctgggcgcgcgcggcatcaagttctggcgccatccgggcgcgcac
ctgtcgaagaagccggggcgctggctgatcgccgccgagctggtcgacaccacccgcctg
ttcgggcgcgggctggcggcgatcgagccgcagtggatcgagccgatcgccggccatctg
cttaaaaaacagctgctcgagccgcactgggagaagaaggcgggcgaggtggtcgccttc
gagcgcgccacgctctacggcatcgtcgtctacaaccagcgccgggtgaacttcgggctg
gtcgacccggtggccgcgcgcgagatcttcatccgcgaggcgctggtgaacggcgagtgg
gagacgcggctgcctttcctggcccacaaccagaagatgatccgccaggtcgaggagctg
gagcacaagtcgcgccgccaggatgtgctggtcgacgagcacctgatcttcgcctactac
gacgcgcagctgccgcaggaggtggtcagcggcgcgagcttcgagcgctggtaccgccat
gagcagaagctcaacccgaagctgctgcatctgacgcgcgacgagctgatgcgccacgag
gccgccggcatcaccaccgcggccttcccgaagacgatccgcctcggcggcatcgactgc
accgccacctacctgcacgcgccgggcgatgccaaggacggcgtgaccgtcaccgtgccg
atctacgcgctcaaccaggtcagcgaggagcgctgcgactggctggtgcccggcatgctg
gaggccaaggtgctggcgctggtcaagagcctgcatcagcgcccgcgctcgcggctgatg
ccgctggccgagttcgtcgccgagttcgtcgagctgaacccgttcgcgcaggggccgctg
ctggagacgctgctgaaggcggtgcgcgagcgcacccagctggcggtgcaacgcaacgac
ttcaagctcgacatggtggcgccgcacctgttcatgaacttccgtgtcgtcgacgagcat
ggccgccagctcggcaccggacgcaacctggcggcgctgaaggccgagctgggcgggcag
gcgcgttcggccttccaggcgctggcggcgctgaagacgggcagtggcccgacgtccccg
gccgccgcggtcacgccggcgccgacggccgtgtcggcgggcagccgcagcgcgaaggtc
agtccgccgccgccggctgcgcccgagccgcttgcgccccaggcctacaccgcctggacc
ttcggcgagctgcccgagctgatggagatccgcaaggccggccagacgctgatcggattt
cccgcgctgatcgaccgcggcacgcaggtcgagatcgaggtcttcgacgagccggccgcc
gcggccgtgaagcaccgcgccggcctgcgccgtctgctggcgctgaatctcaaggagccg
ctgaagtacctcgagaagaacattcccgacctgcagaagatggcggtggccttcatgccg
ctgggcacgcaggaggaactgcgcacccagatcatcgatgtggcgctggagcgcgccttc
ctggccgagccgctgccgcatgacgccgcctccttccaggcgcgcatcgacgagggccgc
acccggcttaacctgatcgcgcaggaaatcgcccgtcaggccggcacggtgctgctggag
ttcgccgcggcacagcgcaagctcaaggacgcccgcgcgcccagggaggtcgccgacgac
atcgccgcacagctgcagcgcctgatgggcaagcgcttcatcgccacgacgccgtgggcg
cagctgcagcacctgccgcgctacctcaagggcgtgcagctgcggctcgacaagctgcgc
ggcgatccggcgcgcgatgcgcagcgcctggccgagctgcgcccgctcgagcagcgctgg
agccggcgggtggccgagctcaagggcgcgcccgatgcccgcctcgacgagtaccgctgg
ctgatggaggagctgcgcatcagcttctttgcccaggagctgaagacgccgcagccggtc
agcaccaagcggctggacaaggtctgggcgcagatgtcgatgtga
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