Sphaerotilus sulfidivorans: EWH46_09405
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Entry
EWH46_09405 CDS
T06182
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
snn
Sphaerotilus sulfidivorans
Pathway
snn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
snn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EWH46_09405 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
snn03400
]
EWH46_09405 (mfd)
Enzymes [BR:
snn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EWH46_09405 (mfd)
DNA repair and recombination proteins [BR:
snn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EWH46_09405 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
AAA_30
ERCC3_RAD25_C
Glyco_tran_WecG
ElaD-SseL-like_C
Motif
Other DBs
NCBI-ProteinID:
QEN00967
UniProt:
A0A5C1PZV0
LinkDB
All DBs
Position
2062553..2066014
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AA seq
1153 aa
AA seq
DB search
MQLPQIAPGKRFTVPRPTGSADALLLARFAERQAGQKKVLAVITAEPADVQRLPDELAFF
APGLRVAVFPDWETLPWDSFSPHQDLISERLATLWRIHSGEVDVVLLPATTALTRLAPPA
FLAGYTFHFKKGQKLDEAGLKAQLTLAGYQHVSQVVSPGEYAVRGGLIDLYPMGSAVPYR
VDLFDDEVDSIRVFDPDSQRSLYPVPEVRLLPGREFPMDERARQDFRARWRERMDGDPSK
ARLYKDIAQGIAGGGIEYFLTLFFDEPGTIFDYLGDGAVLALHGEVGEAIERFHAETRER
HRLMQLDPERPILPPEEVFLRQEDFFQHCNRHAQLSVRGAEPVEWARPLPDLSIDRKGQD
PLHRLEAHLARLRNETGGARLLLVAESAGRRESLLELLRDHRLEPPAVDSLAAFLASDHR
YAITTAPLSSGFIWTDAGPGGAVQIVTETELFDSAPTTRRRRRQEATSDVDALIKDLSEL
KIGDPVVHSSHGIGRYQGLVSIDLGEGPTEFLFLEYADKATLYVPVSQLQLISRYTGVSA
DEAPLHRLGSGQWEKARRKAAEQVRDAAAELLNLYARRAAREGFAFRYSPQDYEAFATSF
GFEETPDQAAAIHAVIQDMISPRPMDRLVCGDVGFGKTEVALRAAFVAVTGGKQVALLAP
TTLLAEQHYQTIADRFAPWPVKVAEMSRFRSPKEVKAAMEGLAAGTIDIVVGTHKLLSPE
TKFKNLGLLIIDEEHRFGVRHKEQMKALRAEVDVLTLTATPIPRTLGMALEGLRDLSVIA
TAPQRRLAIKTFVRNENKGTIREAVLRELKRGGQVYFLHNEVETIENRRQALQELIPEAR
IGVAHGQMPERELEKVMRDFVAQRHNLLLCSTIIETGIDVPTANTIVMSRADKFGLAQLH
QLRGRVGRSHHQAYAYLLVPDIEGLTKQAQQRLDAIQSMEELGSGFYLAMHDLEIRGAGE
VLGDSQSGNMMEVGFQLYNEMLAEAVRALKAGKEPDLLSPTGFFGGTTEVNLHAPALLPD
SYCPDVQVRLNLYKRLATADRLDKIDAMLEECVDRFGKLPAQGQALFDLHRLRVQARPYG
IQKIDAGPAVMNIHFRPNPPIDPMRIIELVQKNRSVKLAGNDKLRIERAYPDAKDRAQYV
RDVLRALGQPLGA
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgcagctgccccagatcgcccccggaaaacgctttaccgttccccgcccgaccggctcg
gccgacgcgctgctgctggcgcgcttcgccgagcggcaggccgggcagaagaaggtgctg
gccgtcatcaccgccgagcccgccgacgtgcagcgcctgcccgacgagctggccttcttc
gcacccggcctgcgggtggccgtctttcccgactgggagacgctgccctgggacagcttc
agcccgcaccaggacctgatctccgagcgtctggccacgctgtggcgcatccactccggc
gaggtcgacgtggtgctgctgccggccaccaccgccctcacccggctggcgccgccggcc
ttcctcgccggctacaccttccatttcaagaagggccagaagctcgacgaggcgggcctg
aaggcgcagctcacgctggcgggctaccagcatgtcagccaggtggtgtcgccgggcgag
tacgcggtgcgcggcggcctgatcgacctctacccgatgggctcggccgtgccctaccgg
gtcgacctgttcgacgacgaggtcgactcgatccgtgtcttcgaccccgacagccagcgc
agcctctacccggtgccggaggtgcggctgctgcccgggcgcgagttcccgatggacgag
cgcgcccgccaggacttccgcgcccgctggcgcgagcgcatggacggcgacccgagcaag
gcgcggctgtacaaggacatcgcgcaaggcatcgccggcggcggcatcgagtacttcctg
acgctgtttttcgacgagccggggacgatcttcgactacctgggcgacggcgcggtgctg
gccctgcacggcgaggtgggcgaggcgatcgagcgcttccatgccgagacgcgcgagcgc
caccggctgatgcagctcgaccccgagcggccgatcctgccgcccgaggaggtcttcctg
cgtcaggaggacttcttccagcactgcaaccgccacgcgcagctctcggtgcgcggcgcc
gagccggtcgagtgggcgcggcccctgccggacctgagcatcgaccgcaagggccaggac
ccgctgcaccggctggaggcgcacctggcgcggctgaggaacgagaccggcggcgcgcgc
ctgctgctggtggccgagtcggccggccggcgcgagagcctgctggagctgctgcgcgac
caccggctggagccgccggcggtggactcgctcgccgccttcctggccagcgaccaccgc
tacgcaatcaccaccgcgccgctgtcgtccggcttcatctggaccgacgccggccccggc
ggcgcggtgcagatcgtcaccgagaccgaactcttcgacagcgcgcccaccacccggcgc
cggcgccgccaggaggccaccagcgatgtcgacgcgctgatcaaggacctctccgagctg
aagatcggcgatccggtggtgcattccagccacggcatcggccgctaccaggggctggtc
agcatcgatctgggcgagggcccgaccgagttcctcttcctggaatacgccgacaaggcc
acgctctatgtgccggtctcgcagctgcagctgatcagccgctacaccggcgtgagcgcc
gacgaggcgccgctgcacaggctcggctccggccagtgggagaaggcccggcgcaaggcc
gccgagcaggtgcgcgacgccgccgccgagctgctcaacctctacgcccgccgcgccgcg
cgcgagggcttcgccttccgctactcgccgcaggactacgaggccttcgccaccagcttc
ggcttcgaggagacgcccgaccaggctgcggccatccacgcggtcatccaggacatgatc
agcccgcggccgatggaccggctggtgtgcggcgacgtcggcttcggcaagaccgaggtg
gcgctgcgcgcggccttcgtggccgtcaccggcggcaagcaggtcgcactgctggcgccg
accacgctgctggccgagcagcactaccagacgatcgccgaccgcttcgcgccctggccg
gtcaaggtggccgagatgagccgcttccgctcgcccaaggaggtcaaggcggcgatggag
gggctggccgccggcaccatcgacatcgtcgtgggcacccacaagctgctcagcccggag
acgaagttcaagaacctgggcctgctgatcatcgacgaggagcaccgcttcggggtgcgc
cacaaggagcagatgaaggcgctgcgcgccgaggtcgacgtgctgacgctgaccgccacc
ccgattccgcgcacgctgggcatggcgctggagggcctgcgcgacctgtcggtgatcgcc
accgcgccgcagcgccggctggcgatcaagaccttcgtgcgcaacgagaacaagggcacc
atccgcgaggcggtgctgcgcgaattgaagcgcggcggccaggtctatttcctgcacaac
gaggtcgagacgatcgagaaccggcgccaggcgctgcaggagctgattcccgaggcgcgc
atcggcgtcgcgcacggccagatgcccgagcgcgagctggagaaggtcatgcgcgacttc
gtcgcccagcgccacaacctgctgctgtgctcgaccatcatcgagaccggcatcgacgtg
cccaccgccaacaccatcgtgatgagccgcgccgacaagttcggcctggcgcagctgcac
cagctgcgtggccgggtcggccgcagccaccaccaggcctacgcctacctgctggtgccc
gacatcgagggcctgaccaagcaggcgcagcagcggctggacgcgatccagagcatggag
gagctgggctcgggcttctacctggccatgcacgacctggagatccgcggcgccggcgag
gtgctgggcgacagccagagcggcaacatgatggaggtcggcttccagctctacaacgag
atgctggccgaggcggtgcgtgcgctgaaggccggcaaggagcccgacctgctctcaccc
accggcttcttcggtggcaccaccgaggtcaacctgcacgcgccggcgctgctgcccgac
agctactgcccggacgtgcaggtgcggctgaacctctacaagcgcctggccaccgccgac
cggctggacaagatcgacgcgatgctcgaggaatgcgtcgaccgcttcggcaagctgccg
gcgcagggccaggcgctgttcgacctgcaccggctgcgggtgcaggcgcggccctatggc
atccagaagatcgacgccggcccggcagtgatgaacatccacttccgccccaacccgccg
atcgacccgatgcgcatcatcgagctggtgcagaagaaccgcagcgtcaagctcgccggc
aacgacaagctgcgcatcgagcgggcctacccggacgcgaaggaccgcgcgcagtatgtg
cgcgacgtgctgcgggcgctggggcagccgctcggcgcgtga
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